SRR3550482_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550482_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	582970
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	1914	0.3283187814124226	No Hit
CCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	1205	0.20670017325076762	No Hit
CTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT	1129	0.19366348182582294	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1054	0.1807983258143644	No Hit
TCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	653	0.11201262500643257	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATGCG	35	1.2105556E-7	45.000004	1
GCGATAC	35	1.2105556E-7	45.000004	9
TGTTACG	20	7.0304226E-4	45.0	1
GCGATAT	25	3.888432E-5	45.0	9
CTACCGC	20	7.0304226E-4	45.0	20
CGGTCGT	20	7.0304226E-4	45.0	24
GCTACGA	60	3.6379788E-12	41.250004	10
GTTACGG	50	1.0804797E-9	40.5	2
ATTGCGG	125	0.0	39.600002	2
ACACCGC	40	3.4543154E-7	39.375	33
ACGTGCG	40	3.4543154E-7	39.375	1
CACCGCA	40	3.4543154E-7	39.375	34
TATTGCG	70	0.0	38.57143	1
ACGTAGG	65	9.094947E-12	38.07692	2
CGAATAT	60	1.546141E-10	37.500004	14
GACGAGC	30	1.13923175E-4	37.500004	9
CGGTAGT	60	1.546141E-10	37.500004	12
TACGTGT	30	1.13923175E-4	37.500004	15
ACACGAC	90	0.0	37.5	26
CACGACC	90	0.0	37.5	27