SRR3550476_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550476_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	574649
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	1367	0.2378843433121784	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1316	0.2290093604965814	No Hit
CCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	1179	0.2051687203840953	No Hit
CTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGCT	909	0.15818351724269944	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	621	0.10806596722521052	No Hit
TCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	601	0.10458558180732934	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	35	1.210501E-7	45.000004	28
GTACGAG	30	2.1635988E-6	45.000004	1
TCGTTGA	20	7.0303393E-4	45.0	24
AGTTTCG	20	7.0303393E-4	45.0	1
TAGCCCG	20	7.0303393E-4	45.0	1
CCGACCC	20	7.0303393E-4	45.0	15
TATAGCG	40	6.8048394E-9	45.0	1
TTACGCG	25	3.888362E-5	45.0	1
GCGTATG	20	7.0303393E-4	45.0	1
GCGTACG	20	7.0303393E-4	45.0	1
GCTACGA	95	0.0	42.63158	10
TTGCGAG	80	0.0	42.1875	1
CTACGAA	100	0.0	40.5	11
AATGCGG	40	3.4542063E-7	39.375	2
GCGATAC	40	3.4542063E-7	39.375	9
CCGATAC	30	1.1392114E-4	37.500004	11
CAAGGCG	30	1.1392114E-4	37.500004	1
ATGCACG	30	1.1392114E-4	37.500004	1
TATGCGG	55	2.744855E-9	36.81818	2
AGTACGG	55	2.744855E-9	36.81818	2