SRR3550474_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550474_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	621488
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10037	1.6149949797904386	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTT	1296	0.20853178178822437	No Hit
CGCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTG	1221	0.19646397034214658	No Hit
CTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGCT	1139	0.18326982982776818	No Hit
GCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	1134	0.18246530906469632	No Hit
CCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	934	0.15028447854182223	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCT	905	0.14561825811600546	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTC	902	0.14513554565816236	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTACG	30	2.1638862E-6	45.000004	1
GCCGATA	20	7.030783E-4	45.0	9
CCGACGG	20	7.030783E-4	45.0	2
TATAGCG	25	3.888731E-5	45.0	1
GCTACGA	50	2.1827873E-11	45.0	10
CCGCATG	20	7.030783E-4	45.0	1
CGTTTTT	5385	0.0	43.87187	1
AAACACG	135	0.0	41.666668	40
AATACGG	55	6.002665E-11	40.90909	2
ACACGAC	150	0.0	40.500004	26
CGAATAT	50	1.0804797E-9	40.5	14
ATATCGG	40	3.4548066E-7	39.375	2
ACGATAG	40	3.4548066E-7	39.375	1
TCTACGG	40	3.4548066E-7	39.375	2
GCGAGAC	155	0.0	39.193546	21
GACACGA	155	0.0	39.193546	25
CACGACC	155	0.0	39.193546	27
ACGACCA	155	0.0	39.193546	28
ATCGAGG	35	6.2436593E-6	38.571426	2
AACACGT	140	0.0	38.571426	41