SRR3550469_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550469_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	567831
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	2438	0.4293530997779269	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	1395	0.2456716875267465	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGC	1292	0.22753248765918027	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCG	1151	0.20270115580163817	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC	1109	0.19530458886534902	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1043	0.18368141225118037	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	1014	0.1785742588904093	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	939	0.16536610364703583	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	716	0.12609385539007206	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTTTCG	20	7.030269E-4	45.0	1
GGTCGAT	20	7.030269E-4	45.0	8
ACGCAAC	20	7.030269E-4	45.0	11
ATTACGT	20	7.030269E-4	45.0	17
TAGCACG	20	7.030269E-4	45.0	1
AATGCGA	25	3.888304E-5	45.0	25
TTACGTC	20	7.030269E-4	45.0	18
ATGCGAA	25	3.888304E-5	45.0	26
CGCACGA	20	7.030269E-4	45.0	39
CGTCACT	20	7.030269E-4	45.0	33
CTAAGCG	30	2.163555E-6	44.999996	1
GCGTAAG	30	2.163555E-6	44.999996	1
TACGAGG	60	3.6379788E-12	41.249996	2
TGCGAAG	60	3.6379788E-12	41.249996	1
TACACGG	50	1.0786607E-9	40.5	2
ATAGCGG	45	1.9254003E-8	40.0	2
TATCCGG	45	1.9254003E-8	40.0	10
TCACGGG	85	0.0	39.705883	3
CGTAAGG	85	0.0	39.705883	2
GGTACGC	40	3.4540972E-7	39.375	8