SRR3550465_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550465_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	652460
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2919	0.44738374766269196	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	1957	0.29994175888177055	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	1097	0.16813291236244368	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	1054	0.16154247003647734	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	738	0.11311038224565491	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATTA	20	7.031042E-4	45.0	2
CGACGGT	25	3.8889455E-5	45.0	28
TCTACGG	45	3.8380676E-10	45.0	2
TTACGCG	20	7.031042E-4	45.0	1
ACGTATA	25	3.8889455E-5	45.0	15
TCGACAT	20	7.031042E-4	45.0	19
GACCTAT	90	0.0	42.5	33
CACAACG	255	0.0	41.47059	12
CAACGAG	255	0.0	40.588234	14
ACCTATG	95	0.0	40.26316	34
ACAACGA	260	0.0	39.80769	13
AACGAGC	260	0.0	39.80769	15
AATGCGG	85	0.0	39.705883	2
TCGATGG	40	3.4551522E-7	39.375	2
TGATTCG	40	3.4551522E-7	39.375	15
CGAATAT	105	0.0	38.57143	14
ATTAGCG	35	6.2441395E-6	38.571426	1
GAGTACG	35	6.2441395E-6	38.571426	1
ATCGTAG	35	6.2441395E-6	38.571426	1
TATAGCG	35	6.2441395E-6	38.571426	1