##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550465_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 652460 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19582196609754 33.0 31.0 34.0 30.0 34.0 2 32.29946510130889 34.0 31.0 34.0 30.0 34.0 3 32.391446218925296 34.0 31.0 34.0 30.0 34.0 4 35.911861263525736 37.0 35.0 37.0 35.0 37.0 5 35.88312846764553 37.0 35.0 37.0 35.0 37.0 6 35.90557888606198 37.0 35.0 37.0 35.0 37.0 7 36.08734328541213 37.0 35.0 37.0 35.0 37.0 8 36.06925941820188 37.0 35.0 37.0 35.0 37.0 9 37.630742114459125 39.0 38.0 39.0 35.0 39.0 10 37.403807129939 39.0 37.0 39.0 34.0 39.0 11 37.357361370812 39.0 37.0 39.0 34.0 39.0 12 37.290275265916684 39.0 37.0 39.0 34.0 39.0 13 37.22123042025565 39.0 37.0 39.0 34.0 39.0 14 38.39260950862888 40.0 38.0 41.0 34.0 41.0 15 38.45046133096282 40.0 38.0 41.0 34.0 41.0 16 38.47531036385372 40.0 38.0 41.0 34.0 41.0 17 38.4991110566165 40.0 38.0 41.0 34.0 41.0 18 38.433519296202064 40.0 38.0 41.0 34.0 41.0 19 38.37678938172455 40.0 37.0 41.0 34.0 41.0 20 38.24677068326027 40.0 37.0 41.0 34.0 41.0 21 38.18714863746437 40.0 37.0 41.0 34.0 41.0 22 38.16667075376268 40.0 37.0 41.0 34.0 41.0 23 38.12115991784937 40.0 37.0 41.0 34.0 41.0 24 38.099077338074366 40.0 37.0 41.0 34.0 41.0 25 38.068431781258624 40.0 37.0 41.0 34.0 41.0 26 37.93688042178831 40.0 36.0 41.0 34.0 41.0 27 37.88237593109156 40.0 36.0 41.0 33.0 41.0 28 37.79283021181375 40.0 36.0 41.0 33.0 41.0 29 37.742992673880394 40.0 36.0 41.0 33.0 41.0 30 37.73139196272568 40.0 36.0 41.0 33.0 41.0 31 37.636383839622354 40.0 36.0 41.0 33.0 41.0 32 37.436135548539376 40.0 36.0 41.0 33.0 41.0 33 37.32750973239739 40.0 36.0 41.0 32.0 41.0 34 37.14098028997946 40.0 35.0 41.0 32.0 41.0 35 37.08542592649358 40.0 35.0 41.0 31.0 41.0 36 36.95997149250529 39.0 35.0 41.0 31.0 41.0 37 36.91075621494038 39.0 35.0 41.0 31.0 41.0 38 36.79890568004169 39.0 35.0 41.0 31.0 41.0 39 36.74146154553536 39.0 35.0 41.0 31.0 41.0 40 36.64815927413175 39.0 35.0 41.0 31.0 41.0 41 36.52225730312969 39.0 35.0 41.0 30.0 41.0 42 36.44681513042945 39.0 35.0 41.0 30.0 41.0 43 36.394721515495206 39.0 35.0 41.0 30.0 41.0 44 36.24689023081875 39.0 35.0 41.0 30.0 41.0 45 36.176585537810745 39.0 35.0 41.0 30.0 41.0 46 36.0640851546455 38.0 35.0 40.0 30.0 41.0 47 35.96496183674095 38.0 35.0 40.0 29.0 41.0 48 35.82598780001839 38.0 35.0 40.0 29.0 41.0 49 35.74739754161175 38.0 35.0 40.0 29.0 41.0 50 35.651624620666404 38.0 35.0 40.0 28.0 41.0 51 34.35679428623977 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 5.0 13 11.0 14 8.0 15 16.0 16 31.0 17 59.0 18 155.0 19 244.0 20 415.0 21 736.0 22 1148.0 23 1782.0 24 2783.0 25 4043.0 26 5599.0 27 6719.0 28 7472.0 29 8425.0 30 10040.0 31 12562.0 32 16290.0 33 22063.0 34 36917.0 35 50497.0 36 49363.0 37 72402.0 38 126858.0 39 215651.0 40 163.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.069000398491866 21.355945192042427 24.397051160224382 11.178003249241334 2 33.00110351592435 24.875241394108453 24.57361370812004 17.550041381847162 3 31.76424608405113 24.538209238880544 27.213775557122275 16.48376911994605 4 28.302884468013367 25.90028507494712 26.887625295037243 18.90920516200227 5 25.59620513134905 30.76633050301934 24.45927719706955 19.178187168562058 6 26.440241547374555 34.73684210526316 23.632100052110474 15.190816295251816 7 79.7662691965791 6.264598596082519 9.038715017012537 4.930417190325843 8 79.9206081598872 5.7270943812647515 9.07488581675505 5.277411642093002 9 72.98516384146154 8.303650798516383 11.55473132452564 7.156454035496429 10 37.54973484964596 29.730864727339608 17.59939306624161 15.12000735677283 11 29.345400484320876 24.834012813046012 26.11133249547865 19.709254207154462 12 26.345369831100758 23.137970143763603 29.666952763387794 20.849707261747845 13 24.36777733500904 24.79492995739202 31.68623363884376 19.15105906875517 14 21.734359194433374 27.31048646660332 29.43889280568924 21.51626153327407 15 20.468534469546025 25.6260920209668 33.557612727217 20.34776078227018 16 22.962633724672777 25.598197590656895 30.86166201759495 20.577506667075376 17 23.081108420439566 25.44692394936088 28.02577935812157 23.44618827207798 18 24.370229592618706 24.697452717407963 29.793244030285383 21.139073659687952 19 23.915489072127027 27.099745578272998 27.09897924776998 21.885786101829996 20 25.725255188057506 26.1013701989394 27.67280752843086 20.500567084572236 21 23.897097140054562 27.67158139962603 27.739631548294145 20.691689912025257 22 23.641602550347915 24.99080403396377 26.95215032339147 24.415443092296847 23 21.956595040308986 26.82570579039328 27.8128927443828 23.404806424914938 24 22.686294945284004 24.99524875088128 29.172516322839716 23.145939980995003 25 22.58912423750115 27.113079729025536 27.05437881249425 23.243417220979065 26 22.215768016430125 26.557949912638325 28.385341630138246 22.840940440793307 27 23.567115225454437 26.459706342151247 27.75833001256782 22.214848419826502 28 20.612298071912456 26.800110351592433 28.577537320295498 24.010054256199613 29 22.0799742512951 25.24522576096619 28.339821598258897 24.334978389479815 30 24.291297550807712 25.25825337951752 27.18511479630935 23.26533427336542 31 24.58740765717439 26.687613033749198 24.613462894277045 24.111516414799375 32 22.88937252858413 27.69947582993593 26.47579928271465 22.935352358765286 33 23.54243938325721 26.46874904208687 25.396192870061 24.59261870459492 34 21.32529197192165 26.01906630291512 27.847684149219877 24.807957575943355 35 22.35309444257119 26.852833890200166 27.108175213806213 23.68589645342243 36 23.069153664592466 27.328725132575176 26.502007785917908 23.100113416914446 37 22.92079207920792 27.79204855470067 26.82723845139932 22.459920914692088 38 20.739049137111852 29.421420470220394 25.73996873371548 24.099561658952272 39 22.790515893694632 25.288600067437084 27.91696042669282 24.00392361217546 40 23.787358612022196 25.023296447291788 28.41997976887472 22.769365171811298 41 21.835668086932532 25.80541335867333 27.45884805198786 24.900070502406276 42 22.299604573460442 25.66088342580388 28.787205345921592 23.252306654814088 43 22.631272415167214 24.418814946510132 28.942770438034515 24.00714220028814 44 22.56812678171842 25.169512307267876 26.56576648376912 25.696594427244584 45 22.80231738344113 24.193513778622446 26.86647457315391 26.137694264782514 46 23.410630536737884 25.308064862213776 26.629525181620327 24.65177941942801 47 21.425221469515375 25.354044692394933 29.35781503846979 23.8629187996199 48 21.619409618980473 24.304325169359043 28.845752996352264 25.23051221530822 49 22.453790270667934 23.553934340802503 29.459736995371365 24.5325383931582 50 21.039757226496643 24.12531036385372 29.4137571651902 25.42117524445943 51 21.438862152469117 23.221653434693316 27.18879318272385 28.150691230113722 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 254.0 1 549.0 2 844.0 3 2758.5 4 4673.0 5 3113.5 6 1554.0 7 1543.0 8 1532.0 9 1517.0 10 1502.0 11 1611.0 12 1720.0 13 1743.5 14 1767.0 15 1723.0 16 1679.0 17 1640.5 18 1602.0 19 1645.5 20 1689.0 21 1850.0 22 2011.0 23 2219.0 24 2427.0 25 2740.5 26 3618.0 27 4182.0 28 5033.0 29 5884.0 30 7265.0 31 8646.0 32 9691.0 33 10736.0 34 12821.0 35 14906.0 36 15878.0 37 16850.0 38 18591.5 39 20333.0 40 23399.0 41 26465.0 42 29880.5 43 33296.0 44 37601.5 45 41907.0 46 50304.5 47 58702.0 48 64723.5 49 70745.0 50 69450.0 51 68155.0 52 61160.0 53 54165.0 54 47899.0 55 41633.0 56 37689.0 57 33745.0 58 30617.0 59 27489.0 60 25770.5 61 24052.0 62 21757.0 63 19462.0 64 17315.5 65 15169.0 66 12897.0 67 10625.0 68 8882.0 69 7139.0 70 5814.5 71 4490.0 72 3872.5 73 3255.0 74 2492.0 75 1514.0 76 1299.0 77 896.0 78 493.0 79 414.0 80 335.0 81 223.5 82 112.0 83 98.0 84 84.0 85 56.5 86 29.0 87 27.0 88 25.0 89 14.5 90 4.0 91 4.0 92 4.0 93 4.5 94 5.0 95 3.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 652460.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.59520748755858 #Duplication Level Percentage of deduplicated Percentage of total 1 73.2785877407853 26.083665350285195 2 10.042613897290124 7.149378507829626 3 3.65079678828311 3.898526075215494 4 1.9638583121153124 2.796157763836445 5 1.2958660043368537 2.30633096502219 6 0.9685096328249234 2.0684580800461396 7 0.7919101676482047 1.9731744710261603 8 0.6987494782799295 1.9897706128957922 9 0.5882106542076196 1.8843732254621512 >10 6.595777535504604 43.68777222868213 >50 0.07966104197215079 1.9167710480861548 >100 0.041562282744540435 2.69115394741818 >500 0.002164702226278148 0.47156451234608204 >1k 0.001731761781022518 1.0829032118483395 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2919 0.44738374766269196 No Hit GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC 1957 0.29994175888177055 No Hit CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC 1097 0.16813291236244368 No Hit CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT 1054 0.16154247003647734 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 738 0.11311038224565491 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.17993440210894154 0.0 2 0.0 0.0 0.0 0.8699383870275572 0.0 3 0.0 0.0 0.0 1.2580081537565522 0.0 4 0.0 0.0 0.0 1.7220979063850657 0.0 5 0.0 0.0 0.0 3.1462465131962114 0.0 6 0.0 0.0 0.0 4.172822855040922 0.0 7 0.0 0.0 0.0 5.153266100603869 0.0 8 0.0 0.0 0.0 6.824632927689054 0.0 9 0.0 0.0 0.0 7.575023756245594 0.0 10 0.0 0.0 0.0 8.951200073567728 0.0 11 0.0 0.0 0.0 10.560953928210159 0.0 12 0.0 0.0 0.0 11.851914293596542 0.0 13 0.0 0.0 0.0 12.40765717438617 0.0 14 0.0 0.0 0.0 12.654262330257794 0.0 15 0.0 0.0 0.0 13.069460196793672 0.0 16 0.0 0.0 0.0 13.830273120191276 0.0 17 0.0 0.0 0.0 14.792630965882966 0.0 18 0.0 0.0 0.0 15.783956104588787 0.0 19 0.0 0.0 0.0 16.394721515495203 0.0 20 0.0 0.0 0.0 17.00594672470343 0.0 21 0.0 0.0 0.0 17.72461147043497 0.0 22 0.0 0.0 0.0 18.485884192134385 0.0 23 0.0 0.0 0.0 19.282101584771482 0.0 24 0.0 0.0 0.0 19.928577997118598 0.0 25 0.0 0.0 0.0 20.50914998620605 0.0 26 0.0 0.0 0.0 21.033320050271282 0.0 27 0.0 0.0 0.0 21.54277656867854 0.0 28 0.0 0.0 0.0 22.070625019158264 0.0 29 0.0 0.0 0.0 22.64460656591975 0.0 30 0.0 0.0 0.0 23.336603010146217 0.0 31 0.0 0.0 0.0 23.901695123072678 0.0 32 1.5326610060386844E-4 0.0 0.0 24.46433497838948 0.0 33 1.5326610060386844E-4 0.0 0.0 24.983293995034177 0.0 34 1.5326610060386844E-4 0.0 0.0 25.519572081047112 0.0 35 1.5326610060386844E-4 0.0 0.0 26.10704104466174 0.0 36 1.5326610060386844E-4 0.0 0.0 26.66171106274714 0.0 37 1.5326610060386844E-4 0.0 0.0 27.210097170707783 0.0 38 3.0653220120773687E-4 0.0 0.0 27.76660638200043 0.0 39 3.0653220120773687E-4 0.0 0.0 28.345339177880636 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATTA 20 7.031042E-4 45.0 2 CGACGGT 25 3.8889455E-5 45.0 28 TCTACGG 45 3.8380676E-10 45.0 2 TTACGCG 20 7.031042E-4 45.0 1 ACGTATA 25 3.8889455E-5 45.0 15 TCGACAT 20 7.031042E-4 45.0 19 GACCTAT 90 0.0 42.5 33 CACAACG 255 0.0 41.47059 12 CAACGAG 255 0.0 40.588234 14 ACCTATG 95 0.0 40.26316 34 ACAACGA 260 0.0 39.80769 13 AACGAGC 260 0.0 39.80769 15 AATGCGG 85 0.0 39.705883 2 TCGATGG 40 3.4551522E-7 39.375 2 TGATTCG 40 3.4551522E-7 39.375 15 CGAATAT 105 0.0 38.57143 14 ATTAGCG 35 6.2441395E-6 38.571426 1 GAGTACG 35 6.2441395E-6 38.571426 1 ATCGTAG 35 6.2441395E-6 38.571426 1 TATAGCG 35 6.2441395E-6 38.571426 1 >>END_MODULE