SRR3550463_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550463_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	972978
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12817	1.3172959717485904	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTT	2199	0.22600716562964424	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG	1703	0.17502965123569084	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTC	1483	0.1524186569480502	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCT	1392	0.14306592749270794	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	1309	0.1345354160114617	No Hit
CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT	1226	0.12600490453021548	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	1159	0.11911882899716128	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTAGCG	30	2.1651558E-6	45.000004	1
TATACGG	35	1.2116652E-7	45.000004	2
CGTTTTT	6010	0.0	43.12812	1
TACGGGA	355	0.0	41.197186	4
GCGTAAG	95	0.0	40.26316	1
ACGATAG	45	1.927765E-8	40.0	1
CGGGATA	225	0.0	38.0	6
TAACGCG	30	1.13979295E-4	37.500004	1
TATAGCG	30	1.13979295E-4	37.500004	1
TAGGACG	30	1.13979295E-4	37.500004	1
TCACGAC	55	2.748493E-9	36.81818	25
TAACGGG	310	0.0	36.29032	3
AGATACG	25	0.0021069502	36.0	1
ATGTACG	50	4.87762E-8	36.0	1
CGAATCC	25	0.0021069502	36.0	28
CAATGCG	25	0.0021069502	36.0	1
GCGGAGT	25	0.0021069502	36.0	5
ATACGCA	25	0.0021069502	36.0	10
GTTTTTT	7455	0.0	35.88531	2
CTAACGG	70	2.1827873E-11	35.357143	2