SRR3550461_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550461_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	823873
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2825	0.34289265457176044	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	1660	0.2014873651642911	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	1643	0.19942394034031946	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	1171	0.14213355699240052	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	952	0.11555179014241272	No Hit
CGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	857	0.10402088671433583	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACTCGT	20	7.032121E-4	45.000004	45
CATTTCG	20	7.032121E-4	45.000004	30
AATACGC	20	7.032121E-4	45.000004	45
GTACGAG	35	1.2113742E-7	45.0	1
CGAATAT	180	0.0	41.25	14
TAGTGCG	50	1.0804797E-9	40.5	1
TACGAAT	185	0.0	40.135136	12
TATAGCG	45	1.9272193E-8	40.0	1
GCGATAT	40	3.4566256E-7	39.375004	9
TTGACGT	35	6.2461368E-6	38.571426	19
CGCAATC	35	6.2461368E-6	38.571426	20
GCGTAAG	35	6.2461368E-6	38.571426	1
CGTTTTT	1460	0.0	37.910957	1
GTCGATA	30	1.1396414E-4	37.499996	9
TAGCCGT	30	1.1396414E-4	37.499996	44
TTTGCGC	30	1.1396414E-4	37.499996	13
TAAGCGA	30	1.1396414E-4	37.499996	24
GCGTATG	30	1.1396414E-4	37.499996	1
GAGTACG	55	2.746674E-9	36.81818	1
CACAACG	190	0.0	36.710526	12