SRR3550458_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550458_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	330300
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	899	0.2721768089615501	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	518	0.15682712685437483	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	511	0.15470784135634272	No Hit
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	476	0.14411141386618226	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	468	0.14168937329700274	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGCACG	25	3.8847495E-5	45.000004	44
ACGTTAG	20	7.02598E-4	45.0	1
CCGATAT	20	7.02598E-4	45.0	11
TTGAGCG	45	3.8380676E-10	45.0	1
TGCGCGA	20	7.02598E-4	45.0	21
TCGTGAG	20	7.02598E-4	45.0	1
GTAGACG	20	7.02598E-4	45.0	1
CTCATAC	20	7.02598E-4	45.0	33
ATGACGT	20	7.02598E-4	45.0	44
ACGAACC	20	7.02598E-4	45.0	16
ATAGCGG	30	2.1607884E-6	44.999996	2
CGAATAT	115	0.0	43.043476	14
CCTATGC	110	0.0	42.954548	35
CAGGGTA	80	0.0	42.1875	5
GCTACGA	120	0.0	41.249996	10
TGACTAT	115	0.0	41.086956	23
TGATTCG	55	6.002665E-11	40.909092	15
ATTCGGC	50	1.0768417E-9	40.500004	17
CGAACGG	45	1.9212166E-8	40.0	2
TAGACGG	45	1.9212166E-8	40.0	2