SRR3550457_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550457_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	789244
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15040	1.9056210753581908	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTT	2319	0.29382548362737	No Hit
CGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTG	1978	0.2506195802565493	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC	1512	0.1915757357673926	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCT	1411	0.17877867934377709	No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	961	0.12176209131776738	No Hit
CGTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCT	927	0.11745417133357998	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC	815	0.1032633760915509	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGACAG	20	7.0319424E-4	45.0	1
CGTTTTT	7965	0.0	43.13559	1
TACGCGG	70	0.0	41.785717	2
CGAATAT	55	6.002665E-11	40.909092	14
TATAGCG	40	3.456389E-7	39.375	1
ACACGAC	505	0.0	39.207924	26
AACACGT	450	0.0	39.0	41
CGTGCGG	110	0.0	38.863636	2
GACACGA	510	0.0	38.82353	25
CACGACC	505	0.0	38.76238	27
GCGTAAG	35	6.2458003E-6	38.57143	1
GCTACGA	65	9.094947E-12	38.076927	10
GCGAGAC	525	0.0	37.714287	21
GTTTTTT	9375	0.0	37.656	2
TTCGTAG	30	1.13959795E-4	37.499996	1
ATAGTCG	30	1.13959795E-4	37.499996	1
TGGTCAA	525	0.0	37.285717	14
TCAAGCG	535	0.0	37.009346	17
AGACACG	530	0.0	36.933964	24
CGAGACA	540	0.0	36.666664	22