SRR3550447_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550447_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	787684
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9613	1.2204132621711246	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	1920	0.24375257082789545	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTG	1900	0.24121348154843822	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTT	1859	0.2360083485255509	No Hit
CTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGCT	1556	0.19754114594177358	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	1461	0.18548047186435168	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC	1323	0.1679607558360967	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCT	1265	0.16059739692567068	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1200	0.15234535676743466	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGC	1199	0.15221840230346181	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC	1164	0.1477749960644116	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCG	970	0.12314583005367634	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCT	948	0.12035283184627338	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCGT	20	7.0319336E-4	45.0	17
TACGAGA	20	7.0319336E-4	45.0	34
TACGACG	25	3.8896833E-5	45.0	1
TTGCGAG	50	2.1827873E-11	45.0	1
GCGATCG	25	3.8896833E-5	45.0	9
GCTAACG	25	3.8896833E-5	45.0	1
CGATATT	20	7.0319336E-4	45.0	12
ACGACAC	25	3.8896833E-5	45.0	31
CGTTTTT	5845	0.0	43.575706	1
CGTAAGG	115	0.0	43.04348	2
TAATCGT	65	0.0	41.538464	21
TATCACG	40	3.456371E-7	39.375	1
GATTACG	40	3.456371E-7	39.375	1
ACGGTTA	40	3.456371E-7	39.375	34
TATTGCG	75	0.0	39.0	1
GCTCTAG	75	0.0	39.0	1
GTTCACG	35	6.2457857E-6	38.571426	1
CTTACGT	35	6.2457857E-6	38.571426	22
CGTTTCT	270	0.0	38.333336	1
ACGTGAG	160	0.0	37.96875	44