SRR3550445_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550445_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	313407
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1596	0.5092419760886004	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1039	0.3315178027293583	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	834	0.2661076491590807	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	567	0.18091491255779224	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	535	0.17070454712243185	No Hit
ACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	387	0.12348160698388995	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC	314	0.10018921083447402	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	20	7.0254266E-4	45.0	5
AGCCGAT	20	7.0254266E-4	45.0	43
TGAACGG	55	1.8189894E-12	45.0	2
TAGCCGT	25	3.8842918E-5	45.0	44
GTATCGG	20	7.0254266E-4	45.0	2
GCTACGA	20	7.0254266E-4	45.0	10
GACTGGC	20	7.0254266E-4	45.0	9
CACCGGT	20	7.0254266E-4	45.0	39
CGGTAAT	20	7.0254266E-4	45.0	42
AGGGCGT	25	3.8842918E-5	45.0	6
TCGAACG	20	7.0254266E-4	45.0	1
ACGTTGG	30	2.160432E-6	44.999996	2
CAATTGG	30	2.160432E-6	44.999996	2
TGGTCAA	145	0.0	41.89655	14
GCGCAAG	70	0.0	41.785713	1
GGGAACA	400	0.0	41.625	7
ACGGGAG	195	0.0	41.53846	5
TACGGGA	60	3.6379788E-12	41.249996	4
TAAGGGA	215	0.0	40.813953	4
GTCAAGC	150	0.0	40.5	16