SRR3550444_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550444_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	481584
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	1038	0.21553872221668496	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	856	0.1777467689956477	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	728	0.151167812884149	No Hit
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	666	0.13829363101764178	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCAG	25	3.8874176E-5	45.000004	1
TACGAAT	35	1.2099554E-7	45.000004	12
TATTACG	25	3.8874176E-5	45.000004	1
CGAATAT	35	1.2099554E-7	45.000004	14
GCGATTC	35	1.2099554E-7	45.000004	9
AGCTACG	35	1.2099554E-7	45.000004	9
CCGCTAT	20	7.0291996E-4	45.0	25
TCGATAG	20	7.0291996E-4	45.0	1
CCGTAGG	20	7.0291996E-4	45.0	2
ACGTACG	20	7.0291996E-4	45.0	1
GACCTAT	40	6.8012014E-9	45.0	33
TCGCGGT	20	7.0291996E-4	45.0	30
ACACAAC	300	0.0	40.5	11
CTCGTAG	40	3.452642E-7	39.375	1
GCGTTAG	40	3.452642E-7	39.375	1
GCTACGA	40	3.452642E-7	39.375	10
CTAGCGG	80	0.0	39.375	2
AACGAGC	300	0.0	39.0	15
GCGATTA	70	0.0	38.57143	9
ACAACGA	305	0.0	38.360657	13