SRR3550443_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550443_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	765709
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2596	0.3390321910804235	No Hit
CCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	1875	0.24487109332657708	No Hit
GCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	1691	0.2208410767014623	No Hit
CTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGCT	1365	0.1782661559417481	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTG	1116	0.14574727474797866	No Hit
TCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	794	0.10369474565402784	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	40	6.8102963E-9	45.0	1
TATTGCG	35	1.2112105E-7	45.0	1
TCGTGCG	20	7.03181E-4	45.0	1
TCTACGG	20	7.03181E-4	45.0	2
TATAGCG	25	3.889581E-5	45.0	1
TATCGTG	20	7.03181E-4	45.0	1
TAGTACG	25	3.889581E-5	45.0	1
CCCGACG	30	2.1645483E-6	44.999996	10
TGCGACG	50	1.0804797E-9	40.5	1
CGTTTTT	1885	0.0	40.225468	1
CGAACGG	40	3.4562072E-7	39.375	2
CGCGCAA	70	0.0	38.571426	18
CGTCATA	35	6.2455583E-6	38.571426	38
ACGCGCA	70	0.0	38.571426	17
CATTCCG	30	1.139566E-4	37.499996	11
TAGCACG	30	1.139566E-4	37.499996	1
GTCGTAT	30	1.139566E-4	37.499996	34
TTTGCGC	30	1.139566E-4	37.499996	13
CTACGGG	170	0.0	37.058823	3
ATAACGG	55	2.746674E-9	36.81818	2