SRR3550435_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550435_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	494468
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC	1410	0.2851549544156548	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC	1341	0.2712005630293568	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG	1181	0.23884255401765128	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1019	0.20608006989329947	No Hit
GCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	901	0.18221603824716665	No Hit
CCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	850	0.17190192287468553	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	629	0.12720742292726728	No Hit
CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT	557	0.1126463188719998	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACCCA	30	2.1629821E-6	45.000004	12
TGTTACG	25	3.8875696E-5	45.000004	1
AATACGG	25	3.8875696E-5	45.000004	2
CGATGCA	20	7.029385E-4	45.0	10
AGTACGG	35	1.2100463E-7	45.0	2
ACCCACG	20	7.029385E-4	45.0	28
TAATCGC	20	7.029385E-4	45.0	44
CACAACG	220	0.0	41.93182	12
CATACGA	70	0.0	41.785713	18
ACAACGA	225	0.0	41.0	13
CGGGACA	110	0.0	40.909092	6
GCTACGA	105	0.0	40.714287	10
CGGGTAT	50	1.0786607E-9	40.500004	6
TACGGGA	150	0.0	40.500004	4
CAACGAG	230	0.0	40.1087	14
GCACGCG	45	1.9244908E-8	40.0	1
TGCGTAG	45	1.9244908E-8	40.0	1
ACATACG	75	0.0	39.000004	17
GGAACAC	250	0.0	38.699997	8
ACGGGTA	35	6.241069E-6	38.571426	5