SRR3550433_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550433_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	614636
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC	1246	0.20272161083958634	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	924	0.1503328799484573	No Hit
CTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGCT	860	0.13992021293904033	No Hit
CCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC	813	0.13227341060399977	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	654	0.10640444100247952	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAAGG	115	0.0	45.000004	2
GATAGCG	30	2.1638461E-6	45.000004	1
ATCTCGC	20	7.0307223E-4	45.0	12
ACGTTAG	25	3.888681E-5	45.0	1
ACGATAG	25	3.888681E-5	45.0	1
AATTGCG	20	7.0307223E-4	45.0	1
GCGATAT	25	3.888681E-5	45.0	9
TATAGCG	20	7.0307223E-4	45.0	1
AATAGCG	20	7.0307223E-4	45.0	1
ACACGTG	260	0.0	41.538464	42
TACGAAT	115	0.0	41.08696	12
CACGTGA	260	0.0	40.67308	43
AACACGT	270	0.0	40.000004	41
GGTTACG	45	1.925764E-8	40.0	1
GTATGCG	40	3.4547156E-7	39.375	1
TAGGGCG	195	0.0	39.23077	5
AACGAGC	315	0.0	38.57143	15
TCACGAC	35	6.2435447E-6	38.571426	25
ATTAGCG	35	6.2435447E-6	38.571426	1
CGATTCG	35	6.2435447E-6	38.571426	10