SRR3550428_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550428_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	535849
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2794	0.5214155480368536	No Hit
CGCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTG	706	0.1317535350443875	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGC	625	0.11663733626450735	TruSeq Adapter, Index 15 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	25	3.888009E-5	45.0	1
TGCCCGA	20	7.0299115E-4	45.0	20
AATTGCG	25	3.888009E-5	45.0	1
TACGAAT	45	3.8380676E-10	45.0	12
TTACGCG	20	7.0299115E-4	45.0	1
GCTACGA	45	3.8380676E-10	45.0	10
GTACGAG	40	6.8030204E-9	45.0	1
CGTTTTT	1715	0.0	40.801746	1
CCTCGAT	50	1.0786607E-9	40.5	15
GCTAGCG	45	1.9250365E-8	40.0	1
ATTGCGG	120	0.0	39.375004	2
AACACGT	240	0.0	38.437504	41
TCAAGCG	270	0.0	38.333336	17
AACGGGT	60	1.546141E-10	37.500004	4
AATACGG	30	1.1391084E-4	37.500004	2
AGTACGG	90	0.0	37.5	2
CACGACC	275	0.0	36.818184	27
CTACGAA	55	2.743036E-9	36.81818	11
GTACGGG	215	0.0	36.627907	3
TGCGGGA	425	0.0	36.52941	4