SRR3550427_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550427_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	430988
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	888	0.20603821916155438	No Hit
CCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	754	0.17494686627005857	No Hit
GCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	693	0.16079333995378062	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	618	0.1433914633354061	No Hit
CTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGCT	473	0.10974783520654868	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCCGTA	20	7.0283737E-4	45.0	33
CGCTAAC	20	7.0283737E-4	45.0	34
TGTTACG	25	3.8867332E-5	45.0	1
AGGTGCG	20	7.0283737E-4	45.0	1
ATCGCCC	20	7.0283737E-4	45.0	28
ACGGTCG	20	7.0283737E-4	45.0	36
GCGTATG	30	2.1623327E-6	44.999996	1
TCGAACG	30	2.1623327E-6	44.999996	1
CTACGAA	130	0.0	43.26923	11
CGAATAT	130	0.0	43.26923	14
GCTACGA	140	0.0	40.17857	10
GCCGATT	45	1.9235813E-8	40.0	9
AATGCGG	40	3.4515142E-7	39.375	2
ACAAGCG	105	0.0	38.57143	14
GCGCTAG	35	6.2392046E-6	38.571426	1
CGTTTTT	575	0.0	37.95652	1
ACACGCG	95	0.0	37.894737	36
TACGAAT	150	0.0	37.5	12
AATCCGC	30	1.1387383E-4	37.499996	31
GAGTACG	30	1.1387383E-4	37.499996	1