SRR3550424_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550424_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	550500
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5543	1.0069028156221616	No Hit
CGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTG	1063	0.19309718437783835	No Hit
CCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	959	0.17420526793823796	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT	900	0.16348773841961853	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTC	721	0.13097184377838328	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT	700	0.1271571298819255	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCC	575	0.1044504995458674	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	20	7.030082E-4	45.0	1
TTTACGT	25	3.8881488E-5	45.0	40
TTTACGG	25	3.8881488E-5	45.0	2
TATTGCG	35	1.2103919E-7	45.0	1
CGGGCTA	40	6.8030204E-9	45.0	6
ACGTCGA	20	7.030082E-4	45.0	43
TTACGTC	20	7.030082E-4	45.0	41
CGTCGAT	20	7.030082E-4	45.0	44
ACGTAAG	25	3.8881488E-5	45.0	1
GCTAACG	20	7.030082E-4	45.0	1
AATACGG	25	3.8881488E-5	45.0	2
TACGTCG	20	7.030082E-4	45.0	42
CTATGCG	30	2.1634332E-6	44.999996	1
ATGCGAA	30	2.1634332E-6	44.999996	26
CGCACGG	30	2.1634332E-6	44.999996	2
CGTTTTT	4385	0.0	43.15279	1
CGGGATC	45	1.9252184E-8	40.0	6
CGGGTCA	40	3.4538425E-7	39.375	6
CGCTAGG	40	3.4538425E-7	39.375	2
GGCACCG	120	0.0	39.374996	8