SRR3550419_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550419_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	507144
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC	1304	0.2571261811240989	No Hit
GCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC	1216	0.23977410755130693	No Hit
CTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGCT	961	0.18949253072105754	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	806	0.15892921931443535	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGCGAG	35	1.2101373E-7	45.000004	1
TCCGCGC	20	7.0295535E-4	45.0	17
GTCGACT	20	7.0295535E-4	45.0	42
AGATACG	20	7.0295535E-4	45.0	1
GTTAGCG	20	7.0295535E-4	45.0	1
ATTCGCA	20	7.0295535E-4	45.0	39
TTGTAAC	20	7.0295535E-4	45.0	22
GTATGCG	20	7.0295535E-4	45.0	1
CTTTGCG	25	3.8877115E-5	45.0	1
GTATCGG	20	7.0295535E-4	45.0	2
GCGATAT	20	7.0295535E-4	45.0	9
ACGCTAG	20	7.0295535E-4	45.0	1
ACTCGAT	20	7.0295535E-4	45.0	10
CTATTCG	20	7.0295535E-4	45.0	42
CGTCGAC	20	7.0295535E-4	45.0	41
TTCGCAT	20	7.0295535E-4	45.0	40
TGTGTCG	20	7.0295535E-4	45.0	30
GTGCGCC	20	7.0295535E-4	45.0	19
TAATGCG	20	7.0295535E-4	45.0	24
GCGTACG	45	3.8380676E-10	45.0	1