Basic Statistics
Measure | Value |
---|---|
Filename | SRR3550418_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 371679 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC | 858 | 0.23084435763118175 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 647 | 0.1740749410109261 | No Hit |
CCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC | 601 | 0.16169867008897465 | No Hit |
CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT | 540 | 0.1452866586489955 | Illumina Single End Adapter 1 (95% over 21bp) |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 409 | 0.11004119145822068 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTAGCG | 30 | 2.1615233E-6 | 45.000004 | 1 |
CATAAGG | 30 | 2.1615233E-6 | 45.000004 | 2 |
CGATGCG | 30 | 2.1615233E-6 | 45.000004 | 10 |
TAATGCG | 30 | 2.1615233E-6 | 45.000004 | 24 |
GGTCGAC | 20 | 7.0271204E-4 | 45.0 | 20 |
GCAACCC | 25 | 3.8856942E-5 | 45.0 | 22 |
ATTACGG | 25 | 3.8856942E-5 | 45.0 | 2 |
CAATTGG | 20 | 7.0271204E-4 | 45.0 | 2 |
ACGGGCC | 20 | 7.0271204E-4 | 45.0 | 5 |
CTAACGG | 35 | 1.2089549E-7 | 45.0 | 2 |
CGGGCTA | 25 | 3.8856942E-5 | 45.0 | 6 |
AGCGATA | 20 | 7.0271204E-4 | 45.0 | 42 |
ATGCGAG | 25 | 3.8856942E-5 | 45.0 | 1 |
AATAGCG | 20 | 7.0271204E-4 | 45.0 | 1 |
TGGTCGA | 20 | 7.0271204E-4 | 45.0 | 19 |
TACGTAA | 20 | 7.0271204E-4 | 45.0 | 17 |
TAGCATA | 125 | 0.0 | 41.4 | 30 |
ATGGGCG | 115 | 0.0 | 41.086956 | 5 |
GGCGATA | 110 | 0.0 | 40.90909 | 8 |
AGTACGG | 55 | 6.002665E-11 | 40.90909 | 2 |