SRR3550417_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550417_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	638676
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2351	0.3681052677727048	No Hit
GCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGC	779	0.12197107766692344	Illumina PCR Primer Index 8 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATCTA	30	2.1639808E-6	45.000004	10
TCGATTG	20	7.030929E-4	45.0	12
TCTACGG	20	7.030929E-4	45.0	2
TACACCG	25	3.8888524E-5	45.0	1
TACCGGG	70	0.0	41.785713	3
TTTACGG	45	1.925946E-8	40.000004	2
TCGTAAG	45	1.925946E-8	40.000004	1
TATAGCG	45	1.925946E-8	40.000004	1
CGTAAGG	145	0.0	38.793102	2
TACGGGT	70	0.0	38.571426	4
CGTTTTT	1460	0.0	38.373287	1
ACGGGCG	165	0.0	38.181816	5
CGTTGCG	30	1.1393537E-4	37.500004	28
CGATTGC	30	1.1393537E-4	37.500004	10
ATCGTAG	30	1.1393537E-4	37.500004	1
ATAAGCG	30	1.1393537E-4	37.500004	1
AATAGCG	30	1.1393537E-4	37.500004	1
ATACCGG	30	1.1393537E-4	37.500004	2
TAGGGCG	275	0.0	36.818184	5
ACGGGTA	55	2.744855E-9	36.81818	5