SRR3550413_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550413_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1625517
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	3455	0.21254776172749962	No Hit
CCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	2599	0.15988759268589625	No Hit
CTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGCT	2266	0.13940180262648746	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGATC	25	3.8915212E-5	45.000004	8
TAACGCG	65	0.0	45.000004	1
TATGCGT	25	3.8915212E-5	45.000004	45
TAATGCG	25	3.8915212E-5	45.000004	1
TACGCTA	40	6.8175723E-9	45.0	35
GTATACG	45	3.8562575E-10	45.0	1
ATCGCCT	20	7.0341496E-4	45.0	15
ACGTTAG	50	1.0822987E-9	40.500004	1
ATGACGG	145	0.0	40.344826	2
ACGTACG	45	1.9292202E-8	40.0	1
CGAATAT	170	0.0	39.705883	14
ATCGAAC	110	0.0	38.863636	10
TACGGGT	145	0.0	38.793102	4
CGAACCC	70	0.0	38.571426	12
CGACTTA	35	6.2498875E-6	38.571426	40
TACGAGT	30	1.1401301E-4	37.499996	42
TCGTAGC	30	1.1401301E-4	37.499996	38
CGACTAT	30	1.1401301E-4	37.499996	26
ACGCTAG	55	2.750312E-9	36.81818	1
ACGCATG	80	0.0	36.5625	1