SRR3550410_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550410_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1101735
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	3207	0.2910863320126891	No Hit
CCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	1856	0.16846156289851916	No Hit
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT	1492	0.13542276500247336	Illumina Single End Adapter 1 (95% over 21bp)
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	1300	0.11799570677159209	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1134	0.10292856267614262	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1128	0.1023839671064276	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCAA	20	7.033158E-4	45.000004	42
CATGCGA	25	3.890699E-5	45.000004	18
ACGCAAT	25	3.890699E-5	45.000004	31
TTTCGTC	20	7.033158E-4	45.000004	39
TTCGTGC	25	3.890699E-5	45.000004	26
CGATTAT	20	7.033158E-4	45.000004	10
TCTAGCG	20	7.033158E-4	45.000004	1
CGTTAAT	25	3.890699E-5	45.000004	18
TAGCACG	95	0.0	45.000004	1
TCTCGAT	20	7.033158E-4	45.000004	23
TTACGTC	20	7.033158E-4	45.000004	16
CCGCGTA	20	7.033158E-4	45.000004	45
GTTATAC	20	7.033158E-4	45.000004	28
ATTTCGA	20	7.033158E-4	45.000004	26
GACCGAC	35	1.2118653E-7	45.0	9
CACGCAA	35	1.2118653E-7	45.0	36
ACTAGTC	35	1.2118653E-7	45.0	18
TCTCGAC	35	1.2118653E-7	45.0	43
TAATACG	30	2.1654196E-6	44.999996	1
ATCTCCG	30	2.1654196E-6	44.999996	30