SRR3550407_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550407_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1748589
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14763	0.8442807314926493	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	4444	0.25414777286143286	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT	4188	0.2395073971070389	No Hit
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	3848	0.22006314805823438	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT	3633	0.2077675199832551	No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT	3236	0.1850634997703863	Illumina Single End Adapter 1 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	3110	0.1778576898287705	No Hit
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2881	0.1647614162047228	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCC	2297	0.13136305901501152	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC	1880	0.10751525944633074	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	1855	0.1060855352515657	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGA	20	7.0342957E-4	45.000004	8
ACGTCGT	20	7.0342957E-4	45.000004	9
GCGTAGT	20	7.0342957E-4	45.000004	14
CGCTTAA	20	7.0342957E-4	45.000004	24
CGTTTTT	11170	0.0	42.965534	1
CGCATCG	80	0.0	42.187504	21
CTATCGG	60	3.6379788E-12	41.249996	2
GCTATCG	60	3.6379788E-12	41.249996	1
CACAACG	260	0.0	40.673077	12
GTATCCG	45	1.9292202E-8	40.0	1
CGAACGC	40	3.4596087E-7	39.375004	18
TAGTACG	75	0.0	39.0	1
CGACTAA	70	0.0	38.57143	38
AACGAGC	265	0.0	38.207546	15
CGTTTCT	450	0.0	38.0	1
TAATCGT	125	0.0	37.800003	21
TCGTTTA	90	0.0	37.5	38
TAACGCC	90	0.0	37.5	12
TCACGAC	60	1.5643309E-10	37.499996	25
TCGTTGA	120	0.0	37.499996	24