SRR3550401_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550401_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	965705
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36100	3.738201624719764	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTT	3290	0.3406837491780616	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCT	2492	0.25804981852636155	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTC	2287	0.23682180375994738	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2123	0.21983939194681607	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCC	1538	0.15926188639387803	No Hit
CCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGC	1462	0.1513919882365733	TruSeq Adapter, Index 19 (95% over 22bp)
CGTTTTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTC	1405	0.14548956461859472	No Hit
CGCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTG	1369	0.1417617181230293	TruSeq Adapter, Index 13 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCT	1265	0.130992383802507	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTC	1219	0.12622902439150674	No Hit
CTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGCT	1209	0.12519351147607188	TruSeq Adapter, Index 13 (95% over 23bp)
CGTTTTTTCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGT	1064	0.11017857420226673	No Hit
GCTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGC	1053	0.10903950999528841	TruSeq Adapter, Index 19 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCACGGA	25	3.8903403E-5	45.000004	3
CGTTCAT	25	3.8903403E-5	45.000004	17
TCTACGG	40	6.8139343E-9	45.000004	2
CGTAGCG	25	3.8903403E-5	45.000004	2
AACGCGA	20	7.0327247E-4	45.000004	21
AATTCGG	20	7.0327247E-4	45.000004	2
TCGTAAG	30	2.1651394E-6	45.000004	1
ACGTATC	20	7.0327247E-4	45.000004	20
CGGTCTA	20	7.0327247E-4	45.000004	31
TACGTAG	30	2.1651394E-6	45.000004	1
CGTTATT	1365	0.0	44.505493	1
CGTTTTT	20220	0.0	44.254456	1
GCGAGAC	65	0.0	41.53846	21
AGACACG	65	0.0	41.53846	24
AGTTGCG	60	3.6379788E-12	41.250004	1
GCGATAC	50	1.0804797E-9	40.500004	9
CGTTTCT	440	0.0	40.397728	1
GCGTTAG	45	1.927765E-8	40.0	1
CGCACGG	45	1.927765E-8	40.0	2
GTTAGCG	40	3.4574623E-7	39.375004	1