SRR3550400_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550400_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	378485
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17173	4.537300025100071	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	963	0.2544354465830878	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	704	0.18600472938161353	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	383	0.1011929138539176	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAAACG	20	7.027283E-4	45.000004	44
CTACGAA	40	6.7939254E-9	45.000004	11
GATATCG	20	7.027283E-4	45.000004	44
TATAGAG	20	7.027283E-4	45.000004	1
CAATGCG	20	7.027283E-4	45.000004	1
TAGTGCC	20	7.027283E-4	45.000004	13
GCGAGAC	25	3.8858307E-5	45.0	21
TACGAAT	45	3.8380676E-10	45.0	12
TCTCGTA	25	3.8858307E-5	45.0	28
GGTATAC	25	3.8858307E-5	45.0	8
TCGTACG	25	3.8858307E-5	45.0	30
AAATGCG	25	3.8858307E-5	45.0	1
TAGACGG	60	0.0	44.999996	2
CGTTTTT	7920	0.0	43.52273	1
CGTTATT	495	0.0	42.727276	1
GACGGGC	55	6.002665E-11	40.909092	4
GCGTAAG	50	1.0768417E-9	40.5	1
ACGGGCC	45	1.9224899E-8	40.0	5
ACCTGTA	40	3.4500226E-7	39.375004	14
ATGTGCG	35	6.237191E-6	38.571426	1