SRR3550397_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550397_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	345660
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15840	4.5825377538621765	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1118	0.3234392177284036	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1082	0.3130243591968987	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	983	0.28438349823526005	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	717	0.20742926575247353	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	707	0.20453624949372218	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	390	0.1128276340913036	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	385	0.11138112596192791	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	383	0.11080252271017763	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	371	0.10733090319967598	No Hit
GCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC	349	0.10096626743042296	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTC	30	2.1610813E-6	45.000004	5
GATGGTC	30	2.1610813E-6	45.000004	24
GACGGGT	30	2.1610813E-6	45.000004	4
CGTAAAT	30	2.1610813E-6	45.000004	15
CGGCGTT	20	7.0264353E-4	45.0	42
ATCTCGT	25	3.885127E-5	45.0	19
TACCCTG	25	3.885127E-5	45.0	28
ATTAGCG	20	7.0264353E-4	45.0	1
CGGCATC	20	7.0264353E-4	45.0	22
CTATAAC	20	7.0264353E-4	45.0	21
TAGCGGC	20	7.0264353E-4	45.0	33
ATTACCG	20	7.0264353E-4	45.0	1
GGCCGAT	35	1.2086275E-7	45.0	8
CACGACA	20	7.0264353E-4	45.0	14
TACGGCT	25	3.885127E-5	45.0	7
CGACAAA	20	7.0264353E-4	45.0	16
ACGGGCG	20	7.0264353E-4	45.0	5
CATTATC	20	7.0264353E-4	45.0	35
TCGGCAT	20	7.0264353E-4	45.0	21
TCGTGTA	85	0.0	45.0	17