SRR3550395_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550395_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	452530
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17166	3.793339668088304	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1019	0.22517844120831768	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	931	0.20573221664861996	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	567	0.12529556051532495	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	564	0.12463262104169891	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	515	0.11380460963913994	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	453	0.10010386051753474	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	35	1.2097371E-7	45.000004	21
ACTACGG	35	1.2097371E-7	45.000004	2
CGAATAT	60	0.0	45.000004	14
TCACGAC	20	7.028749E-4	45.0	25
ATTACCG	20	7.028749E-4	45.0	1
ATAGCGG	40	6.7993824E-9	45.0	2
CGACCGT	20	7.028749E-4	45.0	22
GTTAGCG	25	3.8870443E-5	45.0	1
ATCGTTC	20	7.028749E-4	45.0	10
ATCCGGG	20	7.028749E-4	45.0	3
GCCGATT	20	7.028749E-4	45.0	9
TTGCGCG	20	7.028749E-4	45.0	1
TTCGGGC	25	3.8870443E-5	45.0	4
CGGTCTA	20	7.028749E-4	45.0	31
ATTGCGG	25	3.8870443E-5	45.0	2
TTACCGG	20	7.028749E-4	45.0	2
AGGGCGC	20	7.028749E-4	45.0	6
ACGGTTC	20	7.028749E-4	45.0	34
TACCGGA	25	3.8870443E-5	45.0	31
CGTTATT	450	0.0	44.0	1