##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550395_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 452530 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.17687888095817 33.0 31.0 34.0 30.0 34.0 2 32.27109362915166 34.0 31.0 34.0 30.0 34.0 3 32.08274368550151 33.0 31.0 34.0 30.0 34.0 4 35.87554195301969 37.0 35.0 37.0 35.0 37.0 5 33.89398271937772 37.0 35.0 37.0 32.0 37.0 6 34.8334386670497 37.0 35.0 37.0 32.0 37.0 7 35.85839391863523 37.0 35.0 37.0 33.0 37.0 8 35.88083000022098 37.0 35.0 37.0 35.0 37.0 9 37.85724482354761 39.0 38.0 39.0 35.0 39.0 10 37.51330077563919 39.0 37.0 39.0 35.0 39.0 11 37.42465913862064 39.0 37.0 39.0 35.0 39.0 12 37.355689125582835 39.0 37.0 39.0 35.0 39.0 13 37.311597021191965 39.0 37.0 39.0 34.0 39.0 14 38.36916226548516 40.0 38.0 41.0 33.0 41.0 15 38.579075420414114 40.0 38.0 41.0 34.0 41.0 16 38.57864892935275 40.0 38.0 41.0 34.0 41.0 17 38.59037632864119 40.0 38.0 41.0 34.0 41.0 18 38.303796433385635 39.0 38.0 41.0 34.0 41.0 19 37.9508562968201 39.0 37.0 41.0 34.0 41.0 20 37.65037235100435 39.0 35.0 41.0 34.0 41.0 21 37.489178617992174 39.0 35.0 41.0 33.0 41.0 22 37.53377013678651 39.0 35.0 41.0 34.0 41.0 23 37.55886018606501 39.0 35.0 41.0 34.0 41.0 24 37.446149426557355 39.0 35.0 41.0 34.0 41.0 25 37.24015866351402 39.0 35.0 41.0 33.0 41.0 26 37.27182286257265 39.0 35.0 41.0 33.0 41.0 27 37.24134311537357 39.0 35.0 41.0 33.0 41.0 28 37.1163569266126 39.0 35.0 41.0 33.0 41.0 29 37.019680463173714 39.0 35.0 41.0 33.0 41.0 30 36.69419486000928 39.0 35.0 41.0 33.0 41.0 31 36.391397255430576 39.0 35.0 41.0 31.0 41.0 32 35.96825624820454 39.0 35.0 41.0 30.0 41.0 33 35.44411641217157 39.0 35.0 41.0 24.0 41.0 34 34.954358827039094 39.0 35.0 41.0 21.0 41.0 35 34.61519015313902 39.0 35.0 41.0 18.0 41.0 36 34.35781716129318 38.0 34.0 41.0 16.0 41.0 37 34.23321768722516 38.0 34.0 41.0 15.0 41.0 38 34.07785782158089 38.0 34.0 41.0 15.0 41.0 39 33.95608025987227 38.0 34.0 41.0 15.0 41.0 40 33.82521379798025 38.0 34.0 41.0 13.0 41.0 41 33.625198329392525 38.0 33.0 41.0 12.0 41.0 42 33.57914171436148 38.0 33.0 41.0 10.0 41.0 43 33.492745232360285 38.0 33.0 41.0 10.0 41.0 44 33.333562415751445 38.0 33.0 41.0 10.0 41.0 45 33.28937087043953 38.0 33.0 40.0 10.0 41.0 46 33.21564537157757 37.0 33.0 40.0 10.0 41.0 47 33.18599429872053 37.0 33.0 40.0 10.0 41.0 48 33.100095021324556 37.0 33.0 40.0 10.0 41.0 49 33.02108368505955 37.0 33.0 40.0 10.0 41.0 50 32.956725520959935 37.0 33.0 40.0 10.0 41.0 51 32.0765253132389 35.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 12.0 10 13.0 11 16.0 12 8.0 13 15.0 14 18.0 15 24.0 16 54.0 17 131.0 18 232.0 19 394.0 20 677.0 21 1104.0 22 1671.0 23 2739.0 24 4650.0 25 8216.0 26 12366.0 27 14481.0 28 13498.0 29 11916.0 30 10734.0 31 11028.0 32 12276.0 33 16097.0 34 26489.0 35 32712.0 36 29573.0 37 39844.0 38 70709.0 39 130741.0 40 84.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.24502242945219 18.3996641106667 20.0415442070139 27.313769252867214 2 43.604843877753964 20.911320796411285 21.297151570061654 14.186683755773096 3 27.554637261618016 19.29485337988642 39.59207124389543 13.558438114600138 4 25.67409895476543 21.00457428236802 38.525622610655645 14.795704152210904 5 20.395774865754756 29.352971073740967 36.055510131924954 14.195743928579322 6 23.017479504121276 29.36932358075708 36.10125295560515 11.511943959516497 7 66.2455527810311 6.074293417011027 24.41031533820962 3.26983846374826 8 67.71749939230548 5.523832674076857 23.76969482686231 2.988973106755353 9 61.99345899719355 8.094049013325083 25.403840629350537 4.50865136013082 10 35.37113561531832 22.347468676109873 31.70927894283252 10.572116765739288 11 27.07378516341458 21.70375444721897 37.53497005723377 13.687490332132676 12 25.573111174949727 19.591408304421805 40.167723686827394 14.667756833801073 13 22.037433982277417 20.878836762203612 40.96258811570503 16.121141139813936 14 16.76220361081033 22.8740635979935 42.9655492453539 17.398183545842265 15 17.911519678253377 22.972620599739244 43.698539323359775 15.417320398647604 16 21.130974742006057 22.056880206837114 41.613152719156744 15.198992332000088 17 20.869555609572846 22.74125472344375 40.04728968245199 16.341899984531413 18 20.485271694694273 22.716284003270502 41.346651050759064 15.451793251276158 19 21.63591364108457 22.748326077829095 39.55737741144233 16.058382869644003 20 20.742713190285727 24.22756502331337 40.64349324906636 14.386228537334542 21 20.217665127173888 22.801140255894637 42.25487812962677 14.726316487304707 22 19.61129648863059 21.471283671800766 42.3313371489183 16.586082690650343 23 19.613285307051466 22.038096921751045 42.349236514706206 15.999381256491283 24 18.024440368594348 23.593573906702318 41.78684286124677 16.595142863456566 25 18.985039665878507 24.209223697876382 40.68437451660664 16.121362119638476 26 18.25315448699534 24.56455925573995 39.329105252690425 17.85318100457428 27 17.849866307206153 23.234260711996995 42.18659536384328 16.72927761695357 28 16.590723266965725 24.714162596954896 41.37515744812499 17.31995668795439 29 17.963007977371667 24.128345082094004 40.84480586922414 17.06384107131019 30 18.69467217643029 23.958632576845734 40.03535677192672 17.31133847479725 31 19.904094756148762 24.118621969814154 39.17110467814289 16.806178595894195 32 20.125958499988954 24.71239475835856 38.17757938700196 16.98406735465052 33 19.961991470178774 25.065520517976708 37.181844297615626 17.79064371422889 34 18.368947915055355 25.935739067023185 37.79881996773695 17.896493050184517 35 20.025854639471415 26.202461715245395 35.29710737409674 18.47457627118644 36 21.238812896382562 27.599717145824588 33.640863589154314 17.520606368638543 37 19.728194815813318 28.824166353611915 34.15795637858264 17.28968245199213 38 19.75824807195103 27.40525490022761 33.99531522771971 18.84118180010165 39 20.55289152100413 26.504099175745253 33.47115108390604 19.471858219344572 40 20.63045543941838 26.779219057300068 34.238614014540474 18.351711488741078 41 18.450268490486817 27.672861467747996 34.340927673303426 19.535942368461757 42 18.712129582569112 27.461604755485823 34.298499546991366 19.527766114953703 43 19.676706516695024 26.735465052040748 34.50511568293815 19.082712748326077 44 20.356661436810818 27.13499657481272 32.858815990100105 19.649525998276356 45 19.455284732503923 27.23620533445296 32.606898990122204 20.70161094292091 46 18.796543875544163 27.893841292290013 33.74538704616268 19.564227786003137 47 19.314078624621573 26.501005458201664 35.884692727553976 18.300223189622788 48 18.814001281682984 27.21101363445517 35.02419729078735 18.950787793074493 49 19.032771307979583 27.15377985989879 34.97182507237089 18.841623759750732 50 18.097363710693216 26.887941130974742 35.02662806885731 19.988067089474733 51 19.363578105318986 25.791881201246326 34.04017413210174 20.80436656133295 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 361.0 1 1152.5 2 1944.0 3 15488.5 4 29033.0 5 19085.5 6 9138.0 7 8546.5 8 7955.0 9 7491.5 10 7028.0 11 6841.0 12 6654.0 13 6314.0 14 5974.0 15 5566.5 16 5159.0 17 4894.0 18 4629.0 19 4197.5 20 3766.0 21 3649.0 22 3532.0 23 3732.5 24 3933.0 25 4547.5 26 5333.0 27 5504.0 28 7356.0 29 9208.0 30 9826.0 31 10444.0 32 11667.0 33 12890.0 34 13896.0 35 14902.0 36 15581.5 37 16261.0 38 17008.0 39 17755.0 40 18705.5 41 19656.0 42 20914.0 43 22172.0 44 23117.0 45 24062.0 46 25771.0 47 27480.0 48 27585.0 49 27690.0 50 26970.0 51 26250.0 52 24624.0 53 22998.0 54 21209.0 55 19420.0 56 18400.0 57 17380.0 58 16630.5 59 15881.0 60 14943.0 61 14005.0 62 12336.5 63 10668.0 64 9235.5 65 7803.0 66 6943.5 67 6084.0 68 5185.0 69 4286.0 70 3307.5 71 2329.0 72 1832.0 73 1335.0 74 1123.5 75 693.0 76 474.0 77 330.5 78 187.0 79 159.0 80 131.0 81 99.0 82 67.0 83 39.5 84 12.0 85 10.0 86 8.0 87 5.5 88 3.0 89 2.5 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 452530.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.84109804319556 #Duplication Level Percentage of deduplicated Percentage of total 1 77.37938474532965 26.186033456888513 2 7.590700823826108 5.1375530159132925 3 2.9098728487385874 2.954198771021859 4 1.609161767162422 2.178232045196214 5 1.0952049286496195 1.8531468683911385 6 0.9105633187690633 1.848867752700084 7 0.7137835756193117 1.6908653974909074 8 0.6183417091153293 1.6740289921895173 9 0.5747163812641717 1.7504130064852252 >10 6.354599214523142 43.15776006040629 >50 0.19126838872249516 3.973193618539435 >100 0.04847212590912548 2.9934170176722006 >500 0.002620114914006783 0.5712407919535887 >1k 6.550287285016957E-4 0.22588062359359984 >5k 0.0 0.0 >10k+ 6.550287285016957E-4 3.805168581558131 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17166 3.793339668088304 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1019 0.22517844120831768 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 931 0.20573221664861996 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 567 0.12529556051532495 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 564 0.12463262104169891 No Hit GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT 515 0.11380460963913994 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 453 0.10010386051753474 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.839192981680773E-4 0.0 0.0 0.03336795350584491 0.0 2 8.839192981680773E-4 0.0 0.0 0.21766512717388903 0.0 3 8.839192981680773E-4 0.0 0.0 0.29589198506176384 0.0 4 8.839192981680773E-4 0.0 0.0 0.4026252403155592 0.0 5 8.839192981680773E-4 0.0 0.0 0.686584314852054 0.0 6 8.839192981680773E-4 0.0 0.0 0.858064658696661 0.0 7 8.839192981680773E-4 0.0 0.0 1.029324022716726 0.0 8 8.839192981680773E-4 0.0 0.0 1.2858815990100103 0.0 9 8.839192981680773E-4 0.0 0.0 1.3864274191766293 0.0 10 8.839192981680773E-4 0.0 0.0 1.646078713013502 0.0 11 8.839192981680773E-4 0.0 0.0 2.124279053322432 0.0 12 8.839192981680773E-4 0.0 0.0 2.4864649857468013 0.0 13 8.839192981680773E-4 0.0 0.0 2.6179479813493027 0.0 14 8.839192981680773E-4 0.0 0.0 2.67672861467748 0.0 15 8.839192981680773E-4 0.0 0.0 2.7867765672994054 0.0 16 8.839192981680773E-4 0.0 0.0 2.986984288334475 0.0 17 8.839192981680773E-4 0.0 0.0 3.211278810244625 0.0 18 8.839192981680773E-4 0.0 0.0 3.465847568117031 0.0 19 8.839192981680773E-4 0.0 0.0 3.639979669856142 0.0 20 8.839192981680773E-4 0.0 0.0 3.8496895233465183 0.0 21 8.839192981680773E-4 0.0 0.0 4.083707157536517 0.0 22 8.839192981680773E-4 0.0 0.0 4.360373897863125 0.0 23 8.839192981680773E-4 0.0 0.0 4.579585883808808 0.0 24 8.839192981680773E-4 0.0 0.0 4.772943230283075 0.0 25 8.839192981680773E-4 2.2097982454201932E-4 0.0 4.9581243232492875 0.0 26 8.839192981680773E-4 2.2097982454201932E-4 0.0 5.1300466267429785 0.0 27 8.839192981680773E-4 2.2097982454201932E-4 0.0 5.383289505668133 0.0 28 0.0011048991227100965 2.2097982454201932E-4 0.0 5.587032903895874 0.0 29 0.0011048991227100965 2.2097982454201932E-4 0.0 5.821271517910414 0.0 30 0.0011048991227100965 2.2097982454201932E-4 0.0 6.073851457361942 0.0 31 0.0011048991227100965 2.2097982454201932E-4 0.0 6.2647780257662475 0.0 32 0.0011048991227100965 2.2097982454201932E-4 0.0 6.4806753143438005 0.0 33 0.0011048991227100965 2.2097982454201932E-4 0.0 6.683755773097916 0.0 34 0.0013258789472521159 2.2097982454201932E-4 0.0 6.917994387112457 0.0 35 0.0013258789472521159 2.2097982454201932E-4 0.0 7.153558880074249 0.0 36 0.0013258789472521159 2.2097982454201932E-4 0.0 7.3550924800565705 0.0 37 0.0013258789472521159 2.2097982454201932E-4 0.0 7.568558990564162 0.0 38 0.0013258789472521159 2.2097982454201932E-4 0.0 7.833734780014584 0.0 39 0.0013258789472521159 2.2097982454201932E-4 0.0 8.332928203655007 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAGAC 35 1.2097371E-7 45.000004 21 ACTACGG 35 1.2097371E-7 45.000004 2 CGAATAT 60 0.0 45.000004 14 TCACGAC 20 7.028749E-4 45.0 25 ATTACCG 20 7.028749E-4 45.0 1 ATAGCGG 40 6.7993824E-9 45.0 2 CGACCGT 20 7.028749E-4 45.0 22 GTTAGCG 25 3.8870443E-5 45.0 1 ATCGTTC 20 7.028749E-4 45.0 10 ATCCGGG 20 7.028749E-4 45.0 3 GCCGATT 20 7.028749E-4 45.0 9 TTGCGCG 20 7.028749E-4 45.0 1 TTCGGGC 25 3.8870443E-5 45.0 4 CGGTCTA 20 7.028749E-4 45.0 31 ATTGCGG 25 3.8870443E-5 45.0 2 TTACCGG 20 7.028749E-4 45.0 2 AGGGCGC 20 7.028749E-4 45.0 6 ACGGTTC 20 7.028749E-4 45.0 34 TACCGGA 25 3.8870443E-5 45.0 31 CGTTATT 450 0.0 44.0 1 >>END_MODULE