SRR3550392_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550392_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	366390
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16368	4.467370834356832	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1075	0.2934032042359235	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1010	0.2756625453751467	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	989	0.26993094789704963	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	894	0.24400229263899123	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	522	0.1424711373126996	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	428	0.11681541526788394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACTCG	30	2.1614378E-6	45.000004	32
CGTTAGG	45	3.8380676E-10	45.000004	2
ATGAGTC	30	2.1614378E-6	45.000004	13
TACTCGT	30	2.1614378E-6	45.000004	33
CAATAGA	30	2.1614378E-6	45.000004	34
CGGGTAC	25	3.8855855E-5	45.0	6
GCGGTAG	20	7.026989E-4	45.0	1
GGATCGC	25	3.8855855E-5	45.0	8
TGCGGGT	25	3.8855855E-5	45.0	4
GTTACGG	25	3.8855855E-5	45.0	2
TACGCGG	20	7.026989E-4	45.0	2
GCGATCA	35	1.2089004E-7	45.0	9
GGTTATG	50	2.1827873E-11	45.0	1
TTCGAAG	25	3.8855855E-5	45.0	2
TCAACGG	25	3.8855855E-5	45.0	2
ATACACC	20	7.026989E-4	45.0	20
CGTTATT	430	0.0	43.953487	1
CGTTTTT	7460	0.0	43.58244	1
GCGATGA	75	0.0	42.000004	9
CGTACAT	60	3.6379788E-12	41.250004	35