SRR3550391_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550391_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	177388
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8242	4.646312039145827	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	598	0.33711412271405056	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	492	0.27735810765102487	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	449	0.25311746003111824	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	380	0.21421967664103547	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	275	0.15502739756917042	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	257	0.14488014972827926	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	255	0.143752677745958	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	203	0.11443840620560577	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	202	0.11387467021444517	No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	200	0.11274719823212392	No Hit
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	189	0.10654610232935713	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	188	0.1059823663381965	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	187	0.10541863034703589	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCT	20	7.017142E-4	45.000004	36
ACGTTTT	20	7.017142E-4	45.000004	29
TTTCGAC	20	7.017142E-4	45.000004	24
GGCAACG	20	7.017142E-4	45.000004	1
TACGGGA	20	7.017142E-4	45.000004	4
ACGGGAA	20	7.017142E-4	45.000004	5
CTTGGCG	20	7.017142E-4	45.000004	1
GCTTAGT	20	7.017142E-4	45.000004	25
GCGATGT	20	7.017142E-4	45.000004	9
TCCAAGT	40	6.7593646E-9	45.000004	45
ACCACCG	40	6.7593646E-9	45.000004	14
GGGTTAG	20	7.017142E-4	45.000004	7
CTTTCGA	20	7.017142E-4	45.000004	23
GAATTAC	20	7.017142E-4	45.000004	12
AGGGCCG	20	7.017142E-4	45.000004	6
TCGACGT	20	7.017142E-4	45.000004	26
TTCGACG	20	7.017142E-4	45.000004	25
CGATAGG	20	7.017142E-4	45.000004	2
GATAGTG	20	7.017142E-4	45.000004	40
GATAGCG	20	7.017142E-4	45.000004	1