##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550391_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 177388 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.21433806119918 33.0 31.0 34.0 30.0 34.0 2 32.32646514984103 34.0 31.0 34.0 31.0 34.0 3 32.07931201659639 33.0 31.0 34.0 30.0 34.0 4 35.91489277741448 37.0 35.0 37.0 35.0 37.0 5 33.96370103952917 37.0 35.0 37.0 32.0 37.0 6 34.87600626874422 37.0 35.0 37.0 32.0 37.0 7 35.856004915777845 37.0 35.0 37.0 33.0 37.0 8 35.8427740320653 37.0 35.0 37.0 35.0 37.0 9 37.807331950301034 39.0 38.0 39.0 35.0 39.0 10 37.53684578438226 39.0 37.0 39.0 35.0 39.0 11 37.490258642072746 39.0 37.0 39.0 35.0 39.0 12 37.44116851196248 39.0 37.0 39.0 35.0 39.0 13 37.415473425485374 39.0 37.0 39.0 35.0 39.0 14 38.66638667779106 40.0 38.0 41.0 35.0 41.0 15 38.800905360001806 40.0 38.0 41.0 35.0 41.0 16 38.74634135341737 40.0 38.0 41.0 35.0 41.0 17 38.71770920242632 40.0 38.0 41.0 35.0 41.0 18 38.34293751550274 39.0 38.0 41.0 35.0 41.0 19 37.91844431415879 39.0 37.0 41.0 34.0 41.0 20 37.56973414210657 39.0 35.0 41.0 34.0 41.0 21 37.40254695920807 39.0 35.0 41.0 34.0 41.0 22 37.38776016415992 39.0 35.0 41.0 34.0 41.0 23 37.39398944686224 39.0 35.0 41.0 34.0 41.0 24 37.29456896746116 39.0 35.0 41.0 34.0 41.0 25 37.08712539743387 38.0 35.0 41.0 33.0 41.0 26 37.10511421291181 38.0 35.0 41.0 33.0 41.0 27 37.09902586420728 38.0 35.0 41.0 33.0 41.0 28 36.97274336482739 38.0 35.0 41.0 33.0 41.0 29 36.87362166550161 38.0 35.0 41.0 33.0 41.0 30 36.53544771912418 38.0 35.0 41.0 33.0 41.0 31 36.204292285836694 38.0 35.0 41.0 31.0 41.0 32 35.68259408753693 38.0 35.0 41.0 28.0 41.0 33 35.06853902180531 38.0 35.0 41.0 21.0 41.0 34 34.50739621620403 38.0 35.0 41.0 18.0 41.0 35 34.13350959478657 38.0 34.0 41.0 15.0 41.0 36 33.848467765576025 38.0 34.0 41.0 15.0 41.0 37 33.68441495478837 38.0 34.0 41.0 12.0 41.0 38 33.504521162649105 38.0 33.0 41.0 10.0 41.0 39 33.36970933772296 38.0 33.0 41.0 10.0 41.0 40 33.248709044580245 38.0 33.0 41.0 10.0 41.0 41 33.053650754278756 38.0 33.0 41.0 10.0 41.0 42 32.96598980765328 37.0 33.0 41.0 10.0 41.0 43 32.88452431957066 37.0 33.0 41.0 10.0 41.0 44 32.710070579746095 37.0 32.0 40.0 10.0 41.0 45 32.68962951270661 37.0 32.0 40.0 10.0 41.0 46 32.60990596883668 37.0 32.0 40.0 10.0 41.0 47 32.58683789207838 37.0 31.0 40.0 10.0 41.0 48 32.52754414052811 36.0 31.0 40.0 10.0 41.0 49 32.425744695244326 36.0 31.0 40.0 10.0 41.0 50 32.365667350666335 36.0 31.0 40.0 10.0 41.0 51 31.502063273727646 35.0 29.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 4.0 10 8.0 11 4.0 12 11.0 13 9.0 14 17.0 15 12.0 16 20.0 17 64.0 18 110.0 19 159.0 20 280.0 21 420.0 22 664.0 23 1068.0 24 1851.0 25 3372.0 26 5293.0 27 6656.0 28 6278.0 29 5169.0 30 4589.0 31 4511.0 32 4690.0 33 5854.0 34 10184.0 35 14019.0 36 11773.0 37 15032.0 38 25566.0 39 49661.0 40 37.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.30432723746815 17.24017408167407 20.001916702369947 30.453581978487836 2 47.09055854962004 20.792838297968295 18.92912711119129 13.187476041220375 3 26.04009290369134 19.709337722957585 41.20797348185898 13.042595891492095 4 24.04503123097391 20.691365819559383 40.7366901932487 14.526912756218008 5 20.00868153426387 29.12598371930458 37.21334024849482 13.651994497936727 6 21.49807202291023 29.326673732157754 38.35828804654204 10.81696619838997 7 62.01997880352673 6.24112115813922 28.16988747829616 3.5690125600378835 8 62.369495118046316 6.839245044760638 27.788238212280426 3.0030216249126207 9 56.83417142084019 8.931269307957697 29.24662322141295 4.9879360497891625 10 32.81732698942431 21.64351590862967 35.14048300899722 10.39867409294879 11 25.512436015965 20.594966965070917 40.14025751460076 13.752339504363317 12 23.65661713306424 19.774167361941057 41.88445667125172 14.68475883374298 13 19.67945971542607 21.821656481836428 42.57108710848536 15.927796694252146 14 16.005592261032316 23.715809412136107 43.381175727783166 16.897422599048415 15 16.453198638013845 22.276591426703046 45.729699866958306 15.540510068324803 16 18.62189099600875 21.454664351590864 44.23185333844454 15.691591313955849 17 17.654520035177125 22.853857081651523 42.451575078359305 17.04004780481205 18 17.806165016799334 22.529708886734166 43.4493877827136 16.214738313752903 19 20.06674634135342 22.07026405393826 41.970144541908134 15.89284506280019 20 20.63273727647868 21.69932577175457 43.92405348727084 13.743883464495907 21 19.57685976503484 22.458678151847927 43.253771393780866 14.71069068933637 22 18.85189528040228 21.480596207184252 43.77128103366631 15.896227478747152 23 19.18449951518705 21.282724874286874 43.67657338715133 15.85620222337475 24 17.437481678580287 21.679031276072788 44.718357498816154 16.165129546530768 25 17.2497575935238 24.29871242699619 42.58969039619365 15.861839583286356 26 17.14772137912373 23.275531603039664 41.994948925519196 17.581798092317406 27 17.06823460437008 23.96047083229982 43.47870205425395 15.49259250907615 28 16.01122962094392 24.10929713396622 43.738584346178996 16.140888898910863 29 16.503934877218303 23.529212799061945 42.77290459332085 17.1939477303989 30 16.81398967235664 24.444156312715627 42.23340924978014 16.508444765147587 31 18.64951405957562 24.19780368457844 40.01905427650123 17.133627979344713 32 17.990506685908855 24.650483685480413 41.098608699573816 16.260400929036916 33 18.266173585586397 25.750896340225943 38.72189776084065 17.261032313347012 34 17.572778316458837 26.241346652535686 38.761923016213046 17.423952014792434 35 19.440435655173967 25.383904209980386 37.47885990033148 17.696800234514175 36 19.2854082576048 28.835659683856857 34.4966965070918 17.382235551446545 37 18.665862403319277 29.218436421854914 35.991724355649765 16.123976819176043 38 18.675445915169007 28.506437865019052 35.03788305860599 17.780233161205945 39 20.437120887545944 26.4544388571944 35.41840485263941 17.690035402620243 40 20.417390127855324 26.942070489548335 34.700768935891944 17.9397704467044 41 17.51978713328974 28.702054253951793 34.82422711795612 18.953931494802355 42 17.562631068617947 28.21216767763321 34.869325997248964 19.35587525649988 43 19.575168557061357 27.264527476492212 34.113356033102576 19.046947933343855 44 18.508580061785466 28.607910343427967 33.92224953209912 18.961260062687444 45 18.917852391368076 27.69916792567705 34.50515254695921 18.87782713599567 46 18.65176900354026 28.925857442442553 34.15845491239543 18.263918641621757 47 19.03285453356484 26.29884772363407 37.208266624574385 17.460031118226713 48 18.108891244052586 25.957223712990736 37.5329785554829 18.400906487473787 49 18.2131824024173 27.501296592779667 36.7741899113807 17.511331093422328 50 17.95780999842154 26.60270142286964 36.851421742169705 18.588066836539113 51 18.007418765643674 26.088010462939998 35.841206846009875 20.063363925406456 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 205.0 1 544.5 2 884.0 3 7721.5 4 14559.0 5 9530.5 6 4502.0 7 4153.0 8 3804.0 9 3602.5 10 3401.0 11 3303.5 12 3206.0 13 3023.0 14 2840.0 15 2625.0 16 2410.0 17 2120.5 18 1831.0 19 1818.0 20 1805.0 21 1711.0 22 1617.0 23 1580.5 24 1544.0 25 1755.0 26 2137.5 27 2309.0 28 2916.0 29 3523.0 30 3892.0 31 4261.0 32 4735.0 33 5209.0 34 5544.5 35 5880.0 36 5854.5 37 5829.0 38 5910.0 39 5991.0 40 6703.0 41 7415.0 42 7716.5 43 8018.0 44 8638.5 45 9259.0 46 9984.0 47 10709.0 48 10337.5 49 9966.0 50 9240.0 51 8514.0 52 8278.0 53 8042.0 54 7283.5 55 6525.0 56 6264.5 57 6004.0 58 5605.5 59 5207.0 60 5404.5 61 5602.0 62 4979.5 63 4357.0 64 3795.0 65 3233.0 66 2868.5 67 2504.0 68 2119.5 69 1735.0 70 1417.0 71 1099.0 72 893.5 73 688.0 74 584.5 75 356.0 76 231.0 77 182.0 78 133.0 79 93.5 80 54.0 81 35.5 82 17.0 83 13.0 84 9.0 85 6.5 86 4.0 87 3.0 88 2.0 89 2.0 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 177388.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.150134169165895 #Duplication Level Percentage of deduplicated Percentage of total 1 77.06546486604498 27.859268947166665 2 6.727380469700278 4.863914131733827 3 2.9660356173782865 3.2166775655624957 4 1.938371331441225 2.8028953480506007 5 1.4767800891993887 2.669289918145534 6 1.1914044225431182 2.5841657834802803 7 0.9637276611670773 2.4387218977608405 8 0.7641206374949319 2.2098450853496288 9 0.8296166921373546 2.699167925677047 >10 5.9305118048841345 38.277673799806074 >50 0.10292237158095001 2.4911493449387785 >100 0.040545176683404544 2.903804090468352 >500 0.0015594298724386363 0.33711412271405056 >1k 0.0 0.0 >5k 0.0015594298724386363 4.646312039145827 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8242 4.646312039145827 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 598 0.33711412271405056 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 492 0.27735810765102487 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 449 0.25311746003111824 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 380 0.21421967664103547 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 275 0.15502739756917042 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 257 0.14488014972827926 No Hit GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA 255 0.143752677745958 No Hit GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT 203 0.11443840620560577 No Hit GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 202 0.11387467021444517 No Hit AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 200 0.11274719823212392 No Hit ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC 189 0.10654610232935713 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 188 0.1059823663381965 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 187 0.10541863034703589 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.043971407310528336 0.0 2 0.0 0.0 0.0 0.2649559158454912 0.0 3 0.0 0.0 0.0 0.3517712584842267 0.0 4 0.0 0.0 0.0 0.45211626491081697 0.0 5 0.0 0.0 0.0 0.7852842356867432 0.0 6 0.0 0.0 0.0 0.9250907614945768 0.0 7 0.0 0.0 0.0 1.098157710780887 0.0 8 0.0 0.0 0.0 1.30110266759871 0.0 9 0.0 0.0 0.0 1.3811531783435183 0.0 10 0.0 0.0 0.0 1.5998827429138387 0.0 11 0.0 0.0 0.0 1.9302320337339618 0.0 12 0.0 0.0 0.0 2.239723092881142 0.0 13 0.0 0.0 0.0 2.346269195210499 0.0 14 0.0 0.0 0.0 2.3840395066182607 0.0 15 0.0 0.0 0.0 2.4691636412835143 0.0 16 0.0 0.0 0.0 2.6608338782781247 0.0 17 0.0 0.0 0.0 2.90211288249487 0.0 18 0.0 0.0 0.0 3.127607278959118 0.0 19 0.0 0.0 0.0 3.29334566036034 0.0 20 0.0 0.0 0.0 3.4308972422035313 0.0 21 0.0 0.0 0.0 3.6045279274810023 0.0 22 0.0 0.0 0.0 3.7877421246082035 0.0 23 0.0 0.0 0.0 3.950098090062462 0.0 24 0.0 0.0 0.0 4.096669447764223 0.0 25 0.0 0.0 0.0 4.228019933704648 0.0 26 0.0 0.0 0.0 4.352605587751144 0.0 27 0.0 0.0 0.0 4.477754977788802 0.0 28 0.0 0.0 0.0 4.59444832795905 0.0 29 0.0 0.0 0.0 4.738201005705008 0.0 30 0.0 0.0 0.0 4.885899835389091 0.0 31 0.0 0.0 0.0 5.043182176922904 0.0 32 0.0 0.0 0.0 5.196518366518592 0.0 33 0.0 0.0 0.0 5.344780932193835 0.0 34 0.0 0.0 0.0 5.485151193992829 0.0 35 0.0 0.0 0.0 5.655963199314497 0.0 36 0.0 0.0 0.0 5.809863124901346 0.0 37 0.0 0.0 0.0 5.964890522470516 0.0 38 0.0 0.0 0.0 6.115408032110402 0.0 39 0.0 0.0 0.0 6.283401357476267 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCT 20 7.017142E-4 45.000004 36 ACGTTTT 20 7.017142E-4 45.000004 29 TTTCGAC 20 7.017142E-4 45.000004 24 GGCAACG 20 7.017142E-4 45.000004 1 TACGGGA 20 7.017142E-4 45.000004 4 ACGGGAA 20 7.017142E-4 45.000004 5 CTTGGCG 20 7.017142E-4 45.000004 1 GCTTAGT 20 7.017142E-4 45.000004 25 GCGATGT 20 7.017142E-4 45.000004 9 TCCAAGT 40 6.7593646E-9 45.000004 45 ACCACCG 40 6.7593646E-9 45.000004 14 GGGTTAG 20 7.017142E-4 45.000004 7 CTTTCGA 20 7.017142E-4 45.000004 23 GAATTAC 20 7.017142E-4 45.000004 12 AGGGCCG 20 7.017142E-4 45.000004 6 TCGACGT 20 7.017142E-4 45.000004 26 TTCGACG 20 7.017142E-4 45.000004 25 CGATAGG 20 7.017142E-4 45.000004 2 GATAGTG 20 7.017142E-4 45.000004 40 GATAGCG 20 7.017142E-4 45.000004 1 >>END_MODULE