SRR3550390_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550390_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	235988
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12330	5.22484194111565	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCG	903	0.38264657524958895	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	769	0.32586402698442296	No Hit
GAATCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTC	724	0.3067952607759717	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGC	659	0.27925148736376426	No Hit
GCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	379	0.16060138651117853	TruSeq Adapter, Index 16 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	358	0.1517026289472346	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	322	0.13644761598047359	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	274	0.11610759869145888	No Hit
GAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	257	0.1089038425682662	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGA	30	2.1581473E-6	45.000004	13
GCGTTGG	25	3.8813538E-5	45.000004	2
CGTTCAT	25	3.8813538E-5	45.000004	17
AGTATGG	50	2.1827873E-11	45.000004	2
ATCCAAT	25	3.8813538E-5	45.000004	43
CGAATAA	25	3.8813538E-5	45.000004	13
AGCGAAG	30	2.1581473E-6	45.000004	1
CACAACG	30	2.1581473E-6	45.000004	12
TTCCTCG	25	3.8813538E-5	45.000004	12
CGGCGAT	20	7.021882E-4	45.0	31
CTCGTAG	20	7.021882E-4	45.0	1
TGCTTGG	20	7.021882E-4	45.0	2
CGTGACG	20	7.021882E-4	45.0	25
TATGCGC	20	7.021882E-4	45.0	16
GCGCACT	20	7.021882E-4	45.0	19
GTAATGT	20	7.021882E-4	45.0	17
GAGACGA	20	7.021882E-4	45.0	9
ACCTAAG	20	7.021882E-4	45.0	14
TGATTCA	80	0.0	45.0	44
ACGTGAC	20	7.021882E-4	45.0	24