SRR3550389_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550389_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	505458
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14650	2.898361486018621	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1061	0.2099086373150687	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	917	0.18141962339106316	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	897	0.17746281590161794	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	867	0.17152760466745012	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	765	0.1513478864712795	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	620	0.12266103217280169	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	562	0.11118629045341058	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGCG	40	6.8012014E-9	45.0	1
ATATGCG	20	7.0295326E-4	45.0	1
CCTCGTA	20	7.0295326E-4	45.0	42
GCGATAT	40	6.8012014E-9	45.0	9
TGTAGCG	25	3.8876948E-5	45.0	1
ATACGGA	20	7.0295326E-4	45.0	12
TGTCGTG	20	7.0295326E-4	45.0	1
CGTTTTT	7605	0.0	43.402367	1
CGTTATT	555	0.0	42.567566	1
GGCGATA	130	0.0	39.807693	8
CTATAGC	40	3.4530967E-7	39.375	24
GCGATAA	40	3.4530967E-7	39.375	9
TCAACGG	40	3.4530967E-7	39.375	2
GCGAAAG	35	6.2413455E-6	38.571426	1
TAGCGGA	35	6.2413455E-6	38.571426	27
TAGGGTA	135	0.0	38.333332	5
ATGGGCG	65	9.094947E-12	38.076927	5
TACGGGT	65	9.094947E-12	38.076927	4
GCGATTC	30	1.13901704E-4	37.500004	9
AAGTGCG	30	1.13901704E-4	37.500004	1