SRR3550388_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550388_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	374566
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15737	4.201395748679805	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1040	0.2776546723407891	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	927	0.24748642428837642	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	763	0.20370241826540583	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	654	0.1746020727989193	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	652	0.1740681215059562	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	477	0.12734738337168883	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTT	25	3.8857543E-5	45.0	16
GCGCGAC	20	7.02719E-4	45.0	9
CGGTTAT	20	7.02719E-4	45.0	5
ATTACGA	20	7.02719E-4	45.0	32
GGCCGAT	20	7.02719E-4	45.0	8
TTACTCA	25	3.8857543E-5	45.0	34
CGCGACC	20	7.02719E-4	45.0	10
AAAACCG	25	3.8857543E-5	45.0	14
ATACTCC	25	3.8857543E-5	45.0	10
ATCCGAT	20	7.02719E-4	45.0	26
TCAATAG	25	3.8857543E-5	45.0	23
TGCGACG	20	7.02719E-4	45.0	1
TATTACG	20	7.02719E-4	45.0	42
GTATACG	20	7.02719E-4	45.0	1
ACCGTTT	25	3.8857543E-5	45.0	17
GCGTGAC	20	7.02719E-4	45.0	14
TAGGACG	20	7.02719E-4	45.0	1
ATTGCGT	20	7.02719E-4	45.0	12
CAATCGG	35	1.2089913E-7	45.0	2
AGGGCCG	25	3.8857543E-5	45.0	6