SRR3550387_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550387_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	518301
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16960	3.2722298432763974	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	984	0.18985107109575325	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	789	0.15222814542128993	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	668	0.1288826376950845	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	535	0.10322187300429674	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	528	0.10187130644162369	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	25	3.887831E-5	45.000004	25
TAATACG	25	3.887831E-5	45.000004	1
CGTGTAC	135	0.0	45.000004	18
GACCGGT	20	7.029699E-4	45.0	9
TGCGACG	20	7.029699E-4	45.0	1
ACTCGGT	35	1.21021E-7	45.0	45
ACTCGAA	20	7.029699E-4	45.0	44
AACTCGA	20	7.029699E-4	45.0	43
TCGAACA	20	7.029699E-4	45.0	38
TGCGTAG	35	1.21021E-7	45.0	1
CGTTATT	490	0.0	44.540817	1
GCCCTCG	150	0.0	43.500004	13
CCCTCGT	140	0.0	43.392857	14
CGTTTTT	7975	0.0	43.109715	1
TCGTGTA	145	0.0	41.896553	17
GTTACGG	70	0.0	41.785713	2
GCTACGA	60	3.6379788E-12	41.250004	10
CCTCGTG	150	0.0	40.500004	15
TGTTGCG	45	1.9248546E-8	40.0	1
CGTAAGG	45	1.9248546E-8	40.0	2