SRR3550385_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550385_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	530437
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15012	2.830119316714332	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	902	0.17004846946951288	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	823	0.15515508910577505	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	756	0.1425239943669088	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	631	0.11895851910782997	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	615	0.11594213827466786	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	562	0.10595037676481844	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	35	1.2102646E-7	45.000004	1
TAACGCG	25	3.8879545E-5	45.000004	1
GTCTGCG	20	7.0298475E-4	45.0	1
TAGCGCG	20	7.0298475E-4	45.0	1
TCTAGCG	20	7.0298475E-4	45.0	1
ATCGTCC	20	7.0298475E-4	45.0	23
TGCGACG	20	7.0298475E-4	45.0	1
ATGCCGG	20	7.0298475E-4	45.0	2
TTACGAG	30	2.1632823E-6	44.999996	1
CGTTTTT	7050	0.0	43.276596	1
CGTAAGG	90	0.0	42.5	2
TACGAAT	80	0.0	42.1875	12
CGAATAT	80	0.0	42.1875	14
CGTTATT	450	0.0	42.0	1
TAAACGG	55	6.002665E-11	40.909092	2
TCGACGG	55	6.002665E-11	40.909092	2
AAGTACG	40	3.4535333E-7	39.375	1
CCTCGTG	40	3.4535333E-7	39.375	15
GTCGATG	35	6.2419276E-6	38.57143	1
GGCCGAT	105	0.0	38.57143	8