SRR3550384_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550384_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	445987
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15088	3.3830582505768105	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	959	0.2150286891770388	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	920	0.20628403966931771	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	845	0.18946740600062334	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCG	696	0.15605836044548382	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	636	0.14260505351052832	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTC	624	0.13991439212353723	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	614	0.13767217430104467	No Hit
GCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC	577	0.12937596835782209	Illumina PCR Primer Index 11 (95% over 23bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	502	0.1125593346891277	No Hit
CCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC	453	0.10157246735891406	Illumina PCR Primer Index 11 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATTA	30	2.162502E-6	45.000004	9
CGGGTCC	20	7.028638E-4	45.0	6
AATCCGA	25	3.8869526E-5	45.0	26
TCGTTCC	20	7.028638E-4	45.0	37
TTGTGCG	50	2.1827873E-11	45.0	1
ATGTGCG	20	7.028638E-4	45.0	1
AGACGCG	20	7.028638E-4	45.0	1
GTTCGCA	25	3.8869526E-5	45.0	42
CGCTAGG	20	7.028638E-4	45.0	2
TCGCTCA	20	7.028638E-4	45.0	39
TCATCGG	20	7.028638E-4	45.0	2
ACGTAGG	35	1.2097007E-7	45.0	2
CGCCGGT	35	1.2097007E-7	45.0	28
TTCGCAC	25	3.8869526E-5	45.0	43
TCGACAG	20	7.028638E-4	45.0	1
ATTTGCG	20	7.028638E-4	45.0	1
TATCGCT	20	7.028638E-4	45.0	37
ATCGCTC	20	7.028638E-4	45.0	38
CTTACGT	20	7.028638E-4	45.0	22
CGTTTTT	7575	0.0	43.81188	1