SRR3550380_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550380_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	708354
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39221	5.536920805134156	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2360	0.33316674995835416	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	974	0.13750187053365973	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	928	0.13100794235650537	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	891	0.12578456534444643	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCC	884	0.12479635888270554	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	827	0.11674953483710124	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	775	0.10940857254988325	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTT	724	0.10220878261434255	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATACG	20	7.0314505E-4	45.000004	1
TATACGG	35	1.2110468E-7	45.0	2
CGTTATT	1280	0.0	44.47266	1
CGTTTTT	19865	0.0	44.17317	1
CGTTTCT	155	0.0	40.645164	1
GCCCTAC	75	0.0	39.0	26
GTTTTTT	23180	0.0	38.700386	2
ACACGAC	70	0.0	38.571426	26
CGCATGG	35	6.244896E-6	38.571426	2
CGAGGGT	70	0.0	38.571426	4
GTTATTT	1530	0.0	37.941177	2
CCCTCGT	185	0.0	37.7027	14
CCTCGTG	185	0.0	37.7027	15
CGTAAGG	60	1.546141E-10	37.500004	2
CGCACGG	60	1.546141E-10	37.500004	2
TAGTTAG	85	0.0	37.058823	1
TATGCCC	195	0.0	36.92308	10
TACTCCT	195	0.0	36.92308	22
CACAACG	55	2.746674E-9	36.818184	12
CTATGCC	200	0.0	36.0	9