SRR3550369_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550369_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	643510
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGC	3610	0.5609858432658389	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCG	3126	0.4857733368556821	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	2810	0.4366676508523566	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTC	2528	0.39284548802660413	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	1755	0.2727230346070768	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	1339	0.208077574552066	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	776	0.12058864664107785	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	744	0.11561591894453856	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	693	0.10769063417817905	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT	678	0.10535966807042627	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	20	7.0309703E-4	45.0	1
CGACGGT	20	7.0309703E-4	45.0	28
ACTTGCG	35	1.2108103E-7	45.0	1
AGCCCGA	25	3.8888855E-5	45.0	15
TCGATAG	40	6.8066583E-9	45.0	1
TCTAGCG	20	7.0309703E-4	45.0	1
CCCGTTA	20	7.0309703E-4	45.0	17
CTAACGG	20	7.0309703E-4	45.0	2
TACGCGC	20	7.0309703E-4	45.0	1
CCCCGAT	20	7.0309703E-4	45.0	40
CCGACTC	20	7.0309703E-4	45.0	35
CTCGATC	20	7.0309703E-4	45.0	16
TATAGCG	45	3.8380676E-10	45.0	1
CAATGCG	20	7.0309703E-4	45.0	1
CAGTCGA	20	7.0309703E-4	45.0	12
TTCGCGA	20	7.0309703E-4	45.0	21
AGTACGT	20	7.0309703E-4	45.0	34
AGTCGAA	20	7.0309703E-4	45.0	13
CCCGATC	20	7.0309703E-4	45.0	41
ACGCGTT	20	7.0309703E-4	45.0	16