SRR3550363_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550363_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	203981
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	1344	0.6588848961422877	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1101	0.5397561537594188	No Hit
CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	1069	0.5240684181369833	No Hit
CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	876	0.42945176266416973	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCC	736	0.3608179193160147	No Hit
TCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	589	0.288752383800452	No Hit
ACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	377	0.18482113530181732	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC	275	0.1348164780053044	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTC	242	0.11863850064466788	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCT	234	0.11471656673905904	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG	216	0.10589221545143909	No Hit
AGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTG	206	0.10098979806942804	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC	204	0.10000931459302582	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAGG	30	2.1566957E-6	45.000004	2
TCGTGCG	30	2.1566957E-6	45.000004	1
CGTGGCA	20	7.01963E-4	45.0	15
CCTTATA	20	7.01963E-4	45.0	21
AACCGGG	20	7.01963E-4	45.0	3
ACACGTG	20	7.01963E-4	45.0	42
CGTGCGG	40	6.7684596E-9	45.0	2
GACACGA	20	7.01963E-4	45.0	25
CGGCATC	20	7.01963E-4	45.0	22
CGATTAA	20	7.01963E-4	45.0	32
CGCGAGG	20	7.01963E-4	45.0	2
GAATAAG	20	7.01963E-4	45.0	1
TCGGCAT	20	7.01963E-4	45.0	21
GTTACGG	20	7.01963E-4	45.0	2
CCCAATC	20	7.01963E-4	45.0	40
TGCGCGC	20	7.01963E-4	45.0	15
GAGCGTC	20	7.01963E-4	45.0	16
CTACGGG	25	3.879491E-5	45.0	3
TACGAGG	20	7.01963E-4	45.0	2
ACGTGGG	25	3.879491E-5	45.0	3