SRR3550358_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550358_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	376706
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	1656	0.4396001125546182	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	1352	0.3589005749842052	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	980	0.2601498250625156	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	835	0.22165826931346994	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	827	0.21953459727214325	No Hit
ACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	500	0.1327295025829161	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCC	449	0.11919109331945868	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTGG	35	1.2090277E-7	45.000004	6
TGAACGG	30	2.1616015E-6	45.000004	2
AGTTTCG	20	7.027243E-4	45.0	12
CCGATGA	20	7.027243E-4	45.0	18
TAGCGAA	20	7.027243E-4	45.0	20
ATTCGCG	25	3.8857965E-5	45.0	1
TCGGCCG	20	7.027243E-4	45.0	2
CTAACGG	25	3.8857965E-5	45.0	2
GTATGCG	25	3.8857965E-5	45.0	1
GCGGGTG	20	7.027243E-4	45.0	5
GTTCCGA	25	3.8857965E-5	45.0	9
GCGATAT	20	7.027243E-4	45.0	9
TTACGAG	25	3.8857965E-5	45.0	1
TCGAGCG	20	7.027243E-4	45.0	1
TATACGG	20	7.027243E-4	45.0	2
GGTTCCG	25	3.8857965E-5	45.0	8
TCAACGG	50	2.1827873E-11	45.0	2
TTAGGCG	65	0.0	44.999996	1
CGACAGG	100	0.0	42.75	2
GTAGGGT	65	0.0	41.53846	4