SRR3550357_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550357_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	596896
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5255	0.8803878732643542	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTT	962	0.16116710448721386	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	846	0.14173323326006543	No Hit
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	798	0.1336916313729695	No Hit
CGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	780	0.13067603066530853	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCT	717	0.12012142818849515	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	681	0.11409022677317322	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	640	0.10722135849461213	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	631	0.10571355814078165	No Hit
CGTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCT	627	0.10504342465019031	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATACGG	35	1.2106102E-7	45.000004	2
TTCAGCG	25	3.8885446E-5	45.0	1
CGACGGT	50	2.1827873E-11	45.0	28
TATTGCG	40	6.8048394E-9	45.0	1
ACGATAG	20	7.030558E-4	45.0	1
TCTCCGT	20	7.030558E-4	45.0	45
CTCGATA	20	7.030558E-4	45.0	40
ATGCGCT	20	7.030558E-4	45.0	12
TAGTACG	20	7.030558E-4	45.0	1
CGTTTTT	3045	0.0	43.59606	1
CGGTCTA	55	6.002665E-11	40.909092	31
ACGGTCT	55	6.002665E-11	40.909092	30
CTAACGG	40	3.4544973E-7	39.375	2
CGTAAGG	80	0.0	39.375	2
TAAGCGG	40	3.4544973E-7	39.375	2
GCGTAAG	40	3.4544973E-7	39.375	1
GTACGAG	40	3.4544973E-7	39.375	1
ATTGCGG	115	0.0	39.130432	2
CACGACG	65	9.094947E-12	38.07692	26
TACGAGG	65	9.094947E-12	38.07692	2