SRR3550351_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550351_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	539803
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1368	0.2534257868148195	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1002	0.1856232736757669	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	957	0.17728689910948994	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	770	0.1426446314674057	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGAA	20	7.029957E-4	45.000004	10
TCCCGGT	20	7.029957E-4	45.000004	13
TATCGTG	20	7.029957E-4	45.000004	23
ATCGAGC	20	7.029957E-4	45.000004	42
CCGCTAT	35	1.2103192E-7	45.0	25
GTAATCG	25	3.888047E-5	45.0	1
AGTCGAC	25	3.888047E-5	45.0	18
GCGTAAG	70	0.0	41.785713	1
TACGCGG	60	3.6379788E-12	41.249996	2
CGTAAGG	100	0.0	40.5	2
CGATTCG	40	3.4536788E-7	39.375004	10
GGCATAT	40	3.4536788E-7	39.375004	8
TACACGG	40	3.4536788E-7	39.375004	2
AGCAACG	190	0.0	39.078945	10
CGCACGG	70	0.0	38.571426	2
CGAGACA	575	0.0	38.347824	22
AACGGGA	200	0.0	38.25	4
TAGATAC	165	0.0	38.18182	20
GCGAGAC	580	0.0	38.01724	21
GTCGACC	30	1.1391199E-4	37.499996	19