SRR3550348_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550348_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	775892
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6254	0.8060400158784986	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTG	1868	0.24075515664551253	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTT	1735	0.22361359570661896	No Hit
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	1581	0.2037654725142159	No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	1290	0.16626025271558414	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC	1264	0.1629092708779057	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCT	1258	0.16213596737690297	No Hit
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	1223	0.15762503028772046	No Hit
CGTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT	877	0.11303119506323046	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	70	0.0	45.000004	14
GGTTACG	30	2.1645847E-6	45.000004	1
TACGTTG	35	1.2112469E-7	45.000004	1
CCCCGTA	20	7.031868E-4	45.0	44
TATAGCG	55	1.8189894E-12	44.999996	1
CGTTTTT	3960	0.0	42.15909	1
TACGAAT	75	0.0	42.0	12
GCTACGA	75	0.0	42.0	10
CGTAAGG	135	0.0	41.666664	2
TAGCGCG	50	1.0804797E-9	40.5	1
CGTATGG	45	1.9268555E-8	40.0	2
GGATCGA	40	3.45628E-7	39.375	8
TAGCCGT	35	6.245664E-6	38.57143	44
GTTCGAT	35	6.245664E-6	38.57143	39
ACATACG	70	0.0	38.57143	17
GGTACGC	30	1.1395796E-4	37.500004	8
TTAAGCG	30	1.1395796E-4	37.500004	1
TCTCGCA	30	1.1395796E-4	37.500004	19
TGTAACG	30	1.1395796E-4	37.500004	1
ATAGCGG	180	0.0	37.5	2