SRR3550342_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550342_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	674201
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2173	0.32230744243927256	No Hit
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	2141	0.3175610834157766	No Hit
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	1814	0.26905922714442726	No Hit
CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT	1433	0.21254789002092847	No Hit
CGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	861	0.1277067224759382	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	20	7.0312084E-4	45.000004	1
TATGCAC	25	3.889083E-5	45.000004	18
ATCGTCC	20	7.0312084E-4	45.000004	33
ACGATAG	25	3.889083E-5	45.000004	1
ACGTAAC	20	7.0312084E-4	45.000004	35
GTCCAAC	40	6.8084773E-9	45.000004	18
TATACGG	20	7.0312084E-4	45.000004	2
CGATATT	20	7.0312084E-4	45.000004	10
CCTTATC	60	0.0	44.999996	43
AACATCG	30	2.1641627E-6	44.999996	1
AATTGCG	30	2.1641627E-6	44.999996	1
TAGTACG	30	2.1641627E-6	44.999996	1
GCTACGA	105	0.0	40.714287	10
AATGCGA	45	1.9263098E-8	40.0	25
CGCGGGT	40	3.4553887E-7	39.375004	4
ATTAGCG	35	6.244447E-6	38.571426	1
CGTTTTT	1185	0.0	38.544304	1
TCAAGCG	580	0.0	38.01724	17
CACGTGA	530	0.0	37.78302	43
GTGGCGA	155	0.0	37.741936	28