SRR3550341_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550341_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	791823
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7881	0.9952981916413137	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG	2708	0.3419956227591267	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTT	2556	0.32279941350529096	No Hit
CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	2158	0.27253565506432625	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT	1881	0.23755308951621765	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	1834	0.23161741954957105	No Hit
CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT	1825	0.23048080189638342	No Hit
GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	1600	0.2020653605666923	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT	1239	0.15647436358883235	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCC	946	0.11947114443505683	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTC	863	0.10898900385565966	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGTG	35	1.2112832E-7	45.000004	1
GCGAAGT	20	7.031956E-4	45.0	43
TCGATTG	25	3.889703E-5	45.0	1
TAACGCC	45	3.8380676E-10	45.0	12
TATAGCG	25	3.889703E-5	45.0	1
ATAACGC	45	3.8380676E-10	45.0	11
CGCGTAA	20	7.031956E-4	45.0	31
CGACTAT	25	3.889703E-5	45.0	30
TAGTACG	20	7.031956E-4	45.0	1
CGTTTTT	4680	0.0	43.509617	1
TACGGGT	65	0.0	41.538464	4
CGTTCTG	280	0.0	40.982143	1
TTAGGCG	55	6.002665E-11	40.909092	1
CGTTTCT	350	0.0	40.5	1
ATCGCCA	50	1.0804797E-9	40.5	24
AACGGGC	90	0.0	40.0	4
TACGCGG	45	1.9270374E-8	40.0	2
ATTCTCG	35	6.2458257E-6	38.57143	13
TACGAAT	65	9.094947E-12	38.076927	12
CACGCGT	30	1.1396011E-4	37.500004	39