SRR3550335_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550335_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	615518
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1817	0.2951985157217173	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1433	0.23281203799076552	No Hit
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	1361	0.22111457341621202	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	990	0.16084013790011015	No Hit
TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	682	0.11080098388674255	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGAAT	20	7.0307293E-4	45.000004	12
GTCTAGT	20	7.0307293E-4	45.000004	10
AGTGCGT	20	7.0307293E-4	45.000004	33
TCGACAA	35	1.2107012E-7	45.000004	19
CTCACGT	25	3.8886872E-5	45.0	45
CGCATCG	25	3.8886872E-5	45.0	21
CGAATAT	50	2.1827873E-11	45.0	14
GTACCCT	30	2.1638516E-6	44.999996	15
CCCTATA	30	2.1638516E-6	44.999996	6
AATACGG	30	2.1638516E-6	44.999996	2
CGCGAGG	125	0.0	41.4	2
CGACAAT	55	6.002665E-11	40.909092	20
GCTACGA	55	6.002665E-11	40.909092	10
TAATGCG	55	6.002665E-11	40.909092	24
TATTGCG	40	3.4547338E-7	39.375004	1
GAATACG	35	6.243561E-6	38.57143	1
CATCGTT	35	6.243561E-6	38.57143	36
TGGGATC	160	0.0	37.968754	6
CGTTTTT	665	0.0	37.556393	1
CGAGACA	300	0.0	37.5	22