SRR3550333_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550333_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	622927
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8552	1.3728735469806252	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTT	2110	0.3387234780319363	No Hit
CGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG	2053	0.32957312815145273	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCT	1507	0.2419224082436626	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC	1453	0.2332536557253097	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	1129	0.18124114061519248	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	954	0.15314796115756743	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	812	0.13035235268338022	No Hit
CGTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCT	809	0.12987075532124953	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTC	658	0.10563035476067019	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATAT	20	7.0307957E-4	45.0	11
GCAACGA	35	1.2107375E-7	45.0	11
TAACGGT	20	7.0307957E-4	45.0	3
ACTAGCG	20	7.0307957E-4	45.0	1
GTATGCG	20	7.0307957E-4	45.0	1
CGAATTA	20	7.0307957E-4	45.0	41
GTATACG	35	1.2107375E-7	45.0	1
AAATGCG	20	7.0307957E-4	45.0	1
CGTTTTT	5905	0.0	43.666386	1
CTAGCGG	70	0.0	41.785713	2
GCGTAAG	50	1.0804797E-9	40.5	1
ACAACGA	95	0.0	40.263157	13
CGTATGG	45	1.925946E-8	39.999996	2
CGAATAT	90	0.0	39.999996	14
CGCGCAA	40	3.4548248E-7	39.375	18
GCGTTAG	40	3.4548248E-7	39.375	1
GCTAGCG	40	3.4548248E-7	39.375	1
ATAACGG	40	3.4548248E-7	39.375	2
CGCAATC	40	3.4548248E-7	39.375	20
TTTAGCG	35	6.243683E-6	38.571426	1